Gene detail

Gene detail information of Glyur000156s00011987

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G03110.1	1.00E-147	RNA-binding protein-defense related 1
NR	XP_003521526.1	0	PREDICTED: CUGBP Elav-like family member 1-like [Glycine max]
COG	YP_004617565.1	6.00E-14	RNA-binding protein [Ramlibacter tataouinensis TTB310]
Swissprot	tr\|O04425\|FCA_ARATH	3.00E-47	Flowering time control protein FCA
trEMBL	tr\|I1JQF9\|I1JQF9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G36650.1}

Sequence

Transcript Sequence

>Glyur000156s00011987.1
AGAGAGAGAGAGAGAGACCAAGATTTGGGAGCGAGAAACAGTGAGAGAGAGAGAGAGGCATTAATGGCGGAAGGGAAGGAAGAGAGTAAATCTAGCAGCGAAGAGAGTGTGAAACTGTTCGTAGGGCAAGTGCCGAAGCACATGAATGAAGCGGAGCTGCTTGCAATGTTCAAGGAGTTCGCCTTGGTTGACGAAGTCAACATCATCAAAGACAAAGCCACTCGTGCTTCCCGAGGTTGTTGCTTCGTGATTTGTCCTTCCAGGGAAGAGGCTGACAAGGCCGTTAATGCGTGTCACAATAAGAAGACTCTACCAGGGGCATCTAGTCCATTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAGTATCTGCACTTTTCTCCAAGTATGGAACTATAAATGATTTACAGATTTTAAGAGGTTCTCAGCAGACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCACAAAATGGAGGGTTCAAGTGTTCCTTTAGTTGTTAAATGGGCTGATACTGAAAAGGAAAGACAAGCTCGAAGAGCTCAGAAAGCACAGTCCCAGGCCTCTAATGTACCACATGCTGATTCTCAGCACCCTTCATTGTTTGGAGCCTTGCCTATGGGTTATGTTCCTCCGTATAATGGATATGGTTATCAGGCTCCTGGGAGTTATGGGCTCATGCCGTATCGCTTGCCTCCAATGCAGAATCAACCTGGTTACCATAACATGATGCCTCACATGAATCAAGGAAATGTATTGCGACCTGATCTTGGCCCCAATATGAATCCTAGAAATTATCACGTGCCTCCAGCAAGTTATGTTGGCACTTATCNTGCTGTGCCAGGTCTACAACATCCAATGGCATATCCTGCCGGAATGATTAGTCCAAGGCCAATGAGTAGTCCTNCTGGTTCGGTTTCACCTGCAGGTGGAAATAGCAACTCTGCTACATCTTCAGGGTCCAGCAAAAATTCTGGGGGTCAGATTGAAGGACCACCTGGTGCCAACCTATTTATTTATCACATACCGCAAGAATTTGGAGATCAAGAGCTTGCAACTGCTTTTCAACCATTTGGGAGAGTTTTGAGTGCCAAAGTTTTTGTTGATAAGGCAACCGGTGTCAGCAAATGTTTTGGATTTGTTAGTTATGATTCTCCAGAGGCTGCTCAATCTGCCATTAGTATGATGAATGGATGCCAATTAGGAGGAAAGAAATTAAAGGTTCAGCATAAGAGGGACAACAAACAGGCTTACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00156	56786	61890	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000156s00011987.1	PF00076.17	RRM_1	18	82	9.90E-14
Glyur000156s00011987.1	PF00076.17	RRM_1	106	172	9.50E-16
Glyur000156s00011987.1	PF00076.17	RRM_1	349	419	2.70E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.002
SRR1783600	control	15.554
SRR1783602	moderate drought stress	10.263
SRR1811619	moderate drought stress	10.233

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.716
DRR006520	Root Summer glycyrrhizin high producing strain	20.781
DRR006521	Root Winter glycyrrhizin high producing strain	8.753
DRR006522	Root Winter glycyrrhizin high producing strain	8.369
DRR006523	Root Summer glycyrrhizin low producing strain	15.914
DRR006524	Root Summer glycyrrhizin low producing strain	15.616
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.801
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.894

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	51.836
SRR2868004	Drought Stress (root)	40.554
SRR2967015	Control (root)	50.826

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.374
SRR9715740	Leaf	14.412
SRR9715741	Leaf	24.760
SRR9715739	Root	8.103
SRR9715742	Root	14.243
SRR9715743	Root	12.334

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.855
SRR8749028	MeJA induced 9h	35.915
SRR8749029	MeJA induced 9h	34.288
SRR8749030	Uninduced	12.644
SRR8749031	Uninduced	7.797
SRR8749032	Uninduced	8.777

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.091
SRR8400027	Control - Root	44.443