Gene detail information of Glyur000156s00011985 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G03100.1 | 5.00E-136 | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain |
| NR | XP_003521525.1 | 0 | PREDICTED: rho GTPase-activating protein 2-like [Glycine max] |
| Swissprot | tr|F4JI46|RGAP2_ARATH | 4.00E-170 | Rho GTPase-activating protein 2 |
| trEMBL | tr|I1JQF7|I1JQF7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G36630.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00156 | 45826 | 48911 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000156s00011985.1 | PF00786.23 | PBD | 78 | 112 | 7.00E-10 |
| Glyur000156s00011985.1 | PF00620.22 | RhoGAP | 141 | 277 | 5.50E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.897 |
| SRR1783600 | control | 3.898 |
| SRR1783602 | moderate drought stress | 2.730 |
| SRR1811619 | moderate drought stress | 2.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.424 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.325 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.423 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.473 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 85.689 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 84.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.680 |
| SRR2868004 | Drought Stress (root) | 6.070 |
| SRR2967015 | Control (root) | 8.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 59.500 |
| SRR9715740 | Leaf | 85.677 |
| SRR9715741 | Leaf | 27.433 |
| SRR9715739 | Root | 1.500 |
| SRR9715742 | Root | 2.651 |
| SRR9715743 | Root | 3.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.675 |
| SRR8749028 | MeJA induced 9h | 9.608 |
| SRR8749029 | MeJA induced 9h | 10.767 |
| SRR8749030 | Uninduced | 0.257 |
| SRR8749031 | Uninduced | 0.350 |
| SRR8749032 | Uninduced | 1.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.782 |
| SRR8400027 | Control - Root | 10.355 |