Gene detail

Gene detail information of Glyur000156s00011981

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G47980.1	sister-chromatid cohesion protein 3
NR	XP_004494309.1	PREDICTED: cohesin subunit SA-1-like [Cicer arietinum]
Swissprot	tr\|O82265\|SCC3_ARATH	Sister-chromatid cohesion protein 3
trEMBL	tr\|V7CXW4\|V7CXW4_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW35037.1}

Sequence

Transcript Sequence

>Glyur000156s00011981.1
AAAAAATGCTATATTTCGCCCTAGCGACTTGACTTCCACTGAGACTTGACTTCAACAGACACAAGTTACAGCGTGGATAAGAAAAATGCAAAAAAAGAAAAAGAAATCAGTTTAAAATTAAAAAAAAAATGGTGGCCTTGGGTAGGAACAAATAGCAGTGATTTAATGATCAAAAAAAAAATGGCAGTGATTTGGCGGGAGATATCTTAATTCCTATTTGGTTGGTGTGCTAAAAGCCCCTCTTTCCAATTTCCATCCCGCGACGTGAATTCGAAGTCGCTGTGTGTGTTGCAAGCAGAAGCATTAGATCATGGAAGATCCAGCTCCACCCTCCGAAGCATCCACTCGTCGTCCCAAGAGGGGCAGACCTCCGAAGCAACTTCCCAAGGAAAATGACGCCGACGCCGAGCGAGAGAGTTCTCCCGATGATTTCGACGAACCACGCGCCAAACCTAATAAGCGAACTCGTGCTTCCGNAGGAACCTCCAGCGTCGCGTACAAACCCTCTGATATGACCTTGATTGAGGTGATCAAAGGCAATGGCAAACTTATTCCTCATGTGGTCAAACTTTGGGTTGAACGTTATGAAAAGGATCCAAAATCTGCAATGGCTGAACTATTGACGATGCTGTTTGAGGCATGTGGAGCCAAGTATCACGATNAAAGTGATCTCCTGGATGAGACTGATGTTGATGATGTTGTAGTTGCTCTTGTCAACTGTGCTAAAANGGTATACAACTTGCGCCTTTGTATTTTTGGAGAAGTCGAAGATTATCAAAATTCCAAAAAGAAGGAGTTTAAAAACTTCAAAGAGAATCTAGAATCATTCTGGGATAATTTGGTTCGTGAATGTCAGCATGGACCATTGTTTGACCAGGTTTTATTCGACAAGTGCATGGACTATATCATTGCACTGTCATGCACCCCTCCAAGAGTTTACCGTCAAGTTGCTTCATTGATGGGTCTTTGGTTGGTCACATCATACATAACTATTGCTAATATGCTTGGTGCACAAAGAGAGACTACTCGTAGACAATTGGATGCTGAAAAAAGGAAAAAAACTGAGGGGCCTCGGATGGAGTCACTAAATAAAAGGTTTTCAGATACTCATGAGAAAATAACATTGTTGGAGGAGATGATGCGCAAGATATTTACTGGGTTATTTGTGCATCGCTACAGAGACATTGACCCCAATATTAGAATGTCATGCATTGAGTCATTGGAGAATGCCACAAACATTCATGAGTATTTTAAATTGAGTGCTGGTGTCAGAAAGGCTTCTATAAGAGCACTGCAAAATCTTTATGAGGTGGATGATAATGTACCAACCCTTGGTTTATTTACTGAAAGATTTTCTGGCCGGATGATTGAACTTGCTGATGACATTGATGTTTCTGTGGCTGTTCAAGCCATAGGTCTTGTTAAACAACTACTAAGACATCAACTTATTCCNGAAGATGACTTGGGCCCTTTGTATGATTTGCTGATTGATGATCCTCCAGAAATCAGACATGCCATTGGAGCATTAGTATATGATCACTTGATTGCTCAAAAATTCAATAGCTTCCAATCAGGNTCAAGAGGTGAAAGTGGCAATTCTTCTGAGGTCCATCTTAAGAGAATGTTGCGAATTTTGGAGGAGTTCCCACAAGATCCAATTTTGAGTATTTATGTGATTGATGACGTGTGGGAGTACATGAATGCTATAAAGGATTGGAAGTGCATCATATCCATGCTCCTTGATGAAAATCCATCGATTGAATTATCTGACAGTGATGCAACAAACTTGGTGCGACTCCTATGTGCATCTGTGAAAAAGGCTGTTGGAGAGAGGATTGTTCCTGCTACTGATAACAGAAAGCAATACCACAACAAAGCCCAAAAAGAAATATTTGAAAATAATAAACAGGATATAACTGTTGCCATGATGAAGAGTTACCCATTACTCTTGCGGAAGTTTATTTCAGATAAAGCGAAAGTGTCCTCGCTGGTGGAGATTGTTTTGTATATGAACCTTGAGTTTTATTCCTTGAAGAGGCAGGAACAGAATTTCAAAAATGTCCTCCAGCTCATGAAAGAAGCATTTTTTAAACATGGTGACAAGGACCCTCTGAGAGCTTGTGTGAAGGCAATCAATTTTTGTTGCATAGAAAGTCAAGGGGAATTGCAAGATTTTGCCCGAAATAAGTTAAAGGAACTCGAGGATGAGCTTATCTCTAAGCTGAAATCTGCAATTAAAGAAGTAGTGGATGGTGGTGATGAATATTCACTTCTTGTAAACTTGAAAAGGTTGTATGAACTGCAATTGTCAAGATATGTGCCTATTAATAGCCTATATGAAGACATTGTCATGGTGCTACGTGATTTTAGGAATATGGAGGATGAGGTTGTTGGTTTCCTGCTTCTGAACATGTATTTCCATCTGGCTTGGAGTTTGGAGTCTATAATAAATGGAGAAAGTGTTTCTGCTGCATCCTTAACTTCTCTTCTTTCTAAGCGTGACACCTTGTTACAAGAACTTGAATATTTTGTAAACTTGGCTACTGAAAGCAAGGAAGGGGGTAAACATGGAAGTGAACTCGCTTGCAGAGTATGCACCATACTTGCAGAAACATGGTTCTTATTCAGGACGACAAATTTCAGCAAGACAAAGCTGGAAAGGTTAGGATATCAGCCTGATGCACATGTGCTTCAGAAGTTCTGGGAACTTTGTCAACAACAGCTTAATATTTCAGATGAGGCAGAAGATGAAGATGTTAACAAAGAGTACACTGAGGAGACAAATAGAGATGCTGTTATGATTGCTGCTGCAAAACTGATTGCTAATGATGCTGTTCCAAAGGAGTATCTTGCTCCTGAGATTATTTCTCATTTTGTAATGCATGGGACAAGTGTGGCTGAGATTGTAAAGCATCTGATCACAGTTNTAAAGAAAAAAGATGATGATTTGGCTGCCATTTTTCTGGAAGCACTTAAAAGGGCATACCATCGGCATACTGTTGATAACTCTGGAAGTGAGAATATTTCTACAGAAAACAACTCTTTCTCAGAATGTAAAAATCTGGCTGCTCAGCTTTCTGGAACATTTATTGGTGCTGCCCGGAATAAGCACAGGTCAGACATTTTAAAAGTTGTCAAGGATGGTATTGAATATGCTTTTGTAGATGCTCCAAAACAGTTGTCTTTTCTGGAAGTGGCAGTGCTCCATTTTGTGTCAAAACTCCCTGCATCAGATGTGTTGGAAATTATGAAGGATGTCCAAAAGCGAACAGAAAATGTCAATACAGAGGAAAATCCCAGTGGCTGGCGTCCCTATTACACATTTGTTGACAGCTTACGGGAAAAATATGCAAAGAATGAAGGCTTTCAGGATGAGAAAGAGGGGGTTTCTGGTAGGCGTCGGGGTCGCCCACGTAAAAAGCAAAACATACCAGGAAAGAAGCTTTTTGATGAGCACAGTTCAAGTGAGGATGAGGATTCCATTAGTGCATCCGAGCAAGATGCACGAGATGAAGGGGGGAGACAAGAGGAGGAGGATGAAGACACTCCTTTGATACATTCAATCAGACCCTCATCAAAGCTAAGGTCGTTGGGAGTTTCTAGGGAGGAAAGCAAAGGTCAGACAAAGACAGGGAATTCCGTGAGANCTACAGATAATTTATCTGCTTCTAGAACATCAGGGGCATCCAACTAGCGTCGCAAAGTTGTAGGACAAATGTATTTTGGCAATTGCTTTTGCACATAATGACTGCTAGCGTGTTTGGAACTGCGGTACATGCCCTTCCCCATGTGGCTGATATGAAACTCCAAGAGATAACTTCCATGGTGAGAGACACGAGAAACGAGAGTTTCCAAACACATACTGCATTTATTAAAATTAGGAATACCAGTTTGTAATTCAACTTTGCTGATTGTATATGCCTATATGGTAGTAATCGAACGGTGAGAGCCTGTTTTACTAAGATTGCTAGTAAAATGCTTATGCCTCTTAACTGCCAATCTGAAATGAAAAGTTGGGATTGG

Protein Sequence

>Glyur000156s00011981.1
MEDPAPPSEASTRRPKRGRPPKQLPKENDADAERESSPDDFDEPRAKPNKRTRASXGTSSVAYKPSDMTLIEVIKGNGKLIPHVVKLWVERYEKDPKSAMAELLTMLFEACGAKYHDXSDLLDETDVDDVVVALVNCAKXVYNLRLCIFGEVEDYQNSKKKEFKNFKENLESFWDNLVRECQHGPLFDQVLFDKCMDYIIALSCTPPRVYRQVASLMGLWLVTSYITIANMLGAQRETTRRQLDAEKRKKTEGPRMESLNKRFSDTHEKITLLEEMMRKIFTGLFVHRYRDIDPNIRMSCIESLENATNIHEYFKLSAGVRKASIRALQNLYEVDDNVPTLGLFTERFSGRMIELADDIDVSVAVQAIGLVKQLLRHQLIPEDDLGPLYDLLIDDPPEIRHAIGALVYDHLIAQKFNSFQSGSRGESGNSSEVHLKRMLRILEEFPQDPILSIYVIDDVWEYMNAIKDWKCIISMLLDENPSIELSDSDATNLVRLLCASVKKAVGERIVPATDNRKQYHNKAQKEIFENNKQDITVAMMKSYPLLLRKFISDKAKVSSLVEIVLYMNLEFYSLKRQEQNFKNVLQLMKEAFFKHGDKDPLRACVKAINFCCIESQGELQDFARNKLKELEDELISKLKSAIKEVVDGGDEYSLLVNLKRLYELQLSRYVPINSLYEDIVMVLRDFRNMEDEVVGFLLLNMYFHLAWSLESIINGESVSAASLTSLLSKRDTLLQELEYFVNLATESKEGGKHGSELACRVCTILAETWFLFRTTNFSKTKLERLGYQPDAHVLQKFWELCQQQLNISDEAEDEDVNKEYTEETNRDAVMIAAAKLIANDAVPKEYLAPEIISHFVMHGTSVAEIVKHLITVXKKKDDDLAAIFLEALKRAYHRHTVDNSGSENISTENNSFSECKNLAAQLSGTFIGAARNKHRSDILKVVKDGIEYAFVDAPKQLSFLEVAVLHFVSKLPASDVLEIMKDVQKRTENVNTEENPSGWRPYYTFVDSLREKYAKNEGFQDEKEGVSGRRRGRPRKKQNIPGKKLFDEHSSSEDEDSISASEQDARDEGGRQEEEDEDTPLIHSIRPSSKLRSLGVSREESKGQTKTGNSVRXTDNLSASRTSGASN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00156	24664	34304	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000156s00011981.1	PF08514.6	STAG	151	263	1.90E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.853
SRR1783600	control	7.877
SRR1783602	moderate drought stress	10.167
SRR1811619	moderate drought stress	10.168

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.397
DRR006520	Root Summer glycyrrhizin high producing strain	8.390
DRR006521	Root Winter glycyrrhizin high producing strain	18.728
DRR006522	Root Winter glycyrrhizin high producing strain	18.338
DRR006523	Root Summer glycyrrhizin low producing strain	8.041
DRR006524	Root Summer glycyrrhizin low producing strain	8.049
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.674
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.575

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.874
SRR2868004	Drought Stress (root)	22.682
SRR2967015	Control (root)	23.564

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.416
SRR9715740	Leaf	8.648
SRR9715741	Leaf	9.664
SRR9715739	Root	1.067
SRR9715742	Root	8.187
SRR9715743	Root	6.756

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.853
SRR8749028	MeJA induced 9h	17.526
SRR8749029	MeJA induced 9h	11.944
SRR8749030	Uninduced	7.737
SRR8749031	Uninduced	6.582
SRR8749032	Uninduced	4.478

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.146
SRR8400027	Control - Root	17.283