Gene detail

Gene detail information of Glyur000156s00011980

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G09590.1	1.00E-81	Translation protein SH3-like family protein
NR	XP_007163040.1	6.92E-112	hypothetical protein PHAVU_001G200900g [Phaseolus vulgaris]
COG	YP_003859735.1	3.00E-14	50S ribosomal protein L21E [Ignisphaera aggregans DSM 17230]
Swissprot	tr\|Q43291\|RL211_ARATH	1.00E-103	60S ribosomal protein L21-1
trEMBL	tr\|V7CY37\|V7CY37_PHAVU	3.00E-112	Uncharacterized protein {ECO:0000313\|EMBL:ESW35034.1}

Sequence

Transcript Sequence

>Glyur000156s00011980.1
TAGGTATCAGCTATAAAAAACATCACATAGAGGTTTTTCTGAGTCCATTNGCAGCAGGCACTCAGTGAGGGAAAGGGGAGAGTGAGAGAGAAACCCTAGTTAGCAGTAGAGAATATGCCGGCCGGACATGGATTGAGATCTCGCACGAGAGACTCCTTCTCTCGCCCATTCAGGAAGAAGGGAACCATTCCCCTCACCACCTATCTCAGGACCTTTCACATCGGCGACTACGTTGACGTCAAGGTTAACGGCGCCGTTCACAAGGGTATGCCTCACAAGTTCTACCACGGCCGCACCGGTCGCGTCTGGAACGTCACCAAACGCGCCATTGGAGTCGAAGTCAACAAGCAGGTTGGGAACAGGATCATCAGAAAGAGGATTCATGTTCGTGTGGAGCATGTTATGCCTTCCAGGTGCACTGAGGAGTTCCGTTTGAGGAAGATTAAGAACGACCAACTCAAGGCTGAGGCTAAGGCCAAGGGAGAGACCATTAGCACTAAGCGCAAGCCAGAGGGACCCAAGCCAGGTTTCATGGTTGAAGGTGCTACATTGGAGACTGTTACTCCAATTCCATANGATGTGGTCAATGATCTTAAAGGAGGATACTAGTCATCCCATTTTGACCTATTTAATGGCATTTACTTTGTGTTTGTTAGACTGCGTAGTTTTGTTTGGATTTTGGTCATCTTTTTTATTTCTTCATTCGAAGAGCCTTGAAATTTATGATGAACAATCAGACTCGAGTTTTGTGTTGTTTGATTCTAAATACAAGTATATTTTCCATTATGCTCAGTAGTTTATCTTTTTAATGAGGTGATTTTTGAATAATGCTTTGGGGCACTTCAACACCATTCTGTGAGGAAATAGAATGATAGTGTGAATGTGAGTGTCTGGGCAGAGCATTATTTGTAGTGGTACTTATGCTTCTTACTTATATCATTAAATTTTATTTGCGAAGTTCGTTAATGCTATGAAATATCAAGTATGAATGTATACAGCATACTTGATTAATTTTGTGATAGAATTCGAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00156	21765	23363	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000156s00011980.1	PF01157.13	Ribosomal_L21e	4	99	3.10E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	227.961
SRR1783600	control	228.740
SRR1783602	moderate drought stress	178.900
SRR1811619	moderate drought stress	178.081

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	479.768
DRR006520	Root Summer glycyrrhizin high producing strain	475.700
DRR006521	Root Winter glycyrrhizin high producing strain	268.275
DRR006522	Root Winter glycyrrhizin high producing strain	260.543
DRR006523	Root Summer glycyrrhizin low producing strain	450.214
DRR006524	Root Summer glycyrrhizin low producing strain	449.575
DRR006525	Leaf Summer glycyrrhizin high producing strain	103.688
DRR006526	Leaf Summer glycyrrhizin high producing strain	103.799

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	914.544
SRR2868004	Drought Stress (root)	550.274
SRR2967015	Control (root)	524.958

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	299.898
SRR9715740	Leaf	262.143
SRR9715741	Leaf	244.870
SRR9715739	Root	601.205
SRR9715742	Root	500.907
SRR9715743	Root	477.337

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	545.200
SRR8749028	MeJA induced 9h	158.367
SRR8749029	MeJA induced 9h	297.344
SRR8749030	Uninduced	62.082
SRR8749031	Uninduced	54.919
SRR8749032	Uninduced	124.879

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	779.134
SRR8400027	Control - Root	703.064