Gene detail

Gene detail information of Glyur000155s00012830

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18730.1	0	tetratricopeptide repeat (TPR)-containing protein
NR	KHN29157.1	0	Protein TONSOKU [Glycine soja]
COG	YP_722460.1	1.00E-17	hypothetical protein Tery_2811 [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q6Q4D0\|TONS_ARATH	0	Protein TONSOKU
trEMBL	tr\|I1KTF7\|I1KTF7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G15560.1}

Sequence

Transcript Sequence

>Glyur000155s00012830.1
CAACTAAAAATCAAATATACCTTAATTGATAGTTTTCTAACATTGCAGAAAAAACATCTAGAGCTTGCGAGGGATGCTAACGACCTCGTTGAGCAGCAAAGGGCGAGCACGCAGCTCGGTCGAACTTACCACGAACTGTTTTCGAGATCGGATCATGATCACAACTCCATACGCAATGCGAAGAAGTACTTCAAGTGTGCCATGGATCTGGCGGTTACCCTCAAGGAGAATCCGCCGAATAACAAGTCTTCATTTCTCAAGGAATACGTAGACGCGCACAACAACATAGGCATGCTGGAAATGGATCTTGATAACCTGCATGAGGCGCAGAAGATCTTGACTAGAGGATTGGAGATTTGCGATGAAGAGGAGATCAGCGAGTACGACGATGGGCGCAGCAGGCTCCACCATAACCTTGGGAATGTGTATATGGAACTTAGGATTTGGGATGAGGCTAGGAAAAATATTAAGAGGGATATTCAGATTTGTAACAGGATTGGACATTGTCAAGGGGAAGCCAAGGGCTATATTAACCTTGGCGAAGTGCATTACAGGACTCAGAAGTACGAGGAAGCACGGTCTTATTATGAGAAGGCGCTTGCTTTGGCGAAGTCCTTGGAGGATGAGGATGCTTTGGTCAGGCAAATTAATCAGAATATTCAAACTGTGAAAGAAGCTGTCAAGGTAATGGATGAAATAAAGAGAGAAGAGCAGAACCTCAAAAAACTCAAGAGAGATATAGCCAATGTCAGAGGGACATCGAACGAGCGCAAATGTCTGCTGCAGCAAAACGCGTCTCTTGATCGCTTGGTCGAGAAAGCAAGGATGATTTCTTCGTGGGAGAAGCATTGTGAATTTGCAAAGGAGAAGAAGAAAATAGCACGTGAACTTTGTGACAAGCAAAGGTTGGGCGATTCATATCTGGATGTTGGAGAATCATACCAGAAGCTTAGGAAATTCAAGAAGGCAATCAAATGGTACAATAAGAGTTGGGAAATGTACAAAACAATTAGTAACTTAGAGGGGCAAGCACTGGTGAAAATTAATATTGGTAATGTTTTGGATTCTACTCACAATTGGAAAGAAGCGTTGGATGCATTTCAGGAGAGCTACAGGATTGCTGTTGAAGCAGACCTTCCTGATGTACAGCTTTCTGCCTTGGAAAATATGCATTATAGCAACATGATCAGATTTGATGATGAGGACGAGACCAGGAGGTTGAAACTTCTGATTGATAAACTAAAGAAGTCCAACGAAGAGCCAGAAGCTAAAAGTATGCCAGAGGATTGTTGTTCTGAGACTGATACTGAAGCAGATGATTATCTGTCAAATAGTGGGTCTGATGATTTCTGCTTTCCAAAGNCAATTTCTAGATCAGAAAATCTNACTCATGGAGAAGAATTGAAAGATGACACGCCTCTTATGTCACTCTATCAGTCCATTAAAGGCTCATCTAGAAAGATAACAGNCCACAAGGAAAGTNTTACCAACTCTACCAAGCAANCTGAGCAGTCACCAAAAAGTCTGACAAANNTAACCAGCAACCATCANACAGCTGTTGGTCGTAAACGTGTCCGTATAATTCTTTCTGACGATGACGATGACGAGATGGAGTGTTCAAGCAGAAAGGATAATGACTGCCTGTTAAAGGACTTGCCCACTCCTGATGCAACTAAGAGTGAAGAAAGTCCTTGTAAAATTCAGGTTGTCTCAGAGTATGGATCCAAACGTGCAAATAATGTTGAAGAAAGTAGTAGTTCATTCAAATGCTGGAGTACAAATACAGCCTCTAAAACTGGCAGACATTCAAGATCTTTGAGCAATGATATAGTTGCTGAACCTGATTTTCCTAGTGGTTCTAAATGTGATACAGATATCTCTGGCAAACAAAATGGTGTTTCCTATCCCATGTTGCATCATTCCCTTAATGATGTGCAGCAATATATTACATGCCGGATTGGGAATGATCTAATTCATGTAGACTTAGCCTTGTGCACNGCTGGTGATCAGTTGAATATTGACTCCTTAAAGGCTGTAGTTGCATGCTTATACTATCTACAGTTTCCAGCNGAAAAGAGATCAGAGGGTAGGCAGTTCCTGGTTTATGTGTTTTCTGTCACAGTCAATAATGTTAGCATAGAAGTAGGTTTGTTGCCCATTATTCAGCACATAAAATGTGCTGGAAGAGATCTAGAATCCCTCGAAACTGTTGAAAAGCTTAAGGAACATCTGGGAAATGACATGGTTGAAGCTTCCATTGATGGATGGATTCATAAGCGCCTAATAAAAATGTATGTGGACTGCTGCAAAGAGTTGTCTGAGGTACCAAATATCAAGGTACTGAAGAAACTTTACAATTTAGAGGTTTCTGATGATGAAATCATTGTGTCTGACTGTGACCTGCAAGATTTATCTATAACACCATTGATAGATGCACTGCAATCCCAAGAGGCATTTGCAATGCTTGACATCTCTCACAATCTCTTAGGAAATGGGACAATGGAGAAACTTCGAAAGGTGTTCACAGCATCAGGCCAATCGTATGGNGACTTAACTCTGGATTTGCATTGCAATCGATTTGGCCCAACAGCTTTGTTTCAGATTGGTGAATGCCCAGTGCTATTTGCTCGACTGGAAGTGCTCAACATTTCTGGCAATCGTCTCACTGATGCATGTGGATGTTATCTTTCAACAATCTTAAAAAACTGTACAGCCCTTTGTAGCTTGAATGTAGAGAACTGTTCTGTCACATCCAGAACTATCCAAAAAATTGCCGATGCATTGGACTCTAGATCTGTACTTGCACATCTTTGTATAGGACACAACAGCCCGGTATCTGGAAATGCTTTAGTTAATCTTCTNTCCAAGCTTTCTACTTTAAAAAGGTTTTCTGAGTTGAATATGAGTGGTCTAAAACTAGGCAAACCAGTTGTGGATACCCTTTGCCACCTTGCAGGGACCTTGACTTTATCGGGACTAATACTTGGAGGCACTGGTATTGGAACTGAAGGTGCGATAAAATTAGCCGAGTCATTGCTCAAAGGGACTGAAGAGCTTGTGAAACTTGANCTATCATATTGTGGGCTAACATCTNACTATATATTAAACATCNATGTTAANTTTTTNTGTTCCATCNTTGAGCTGAACCTGGAAGGAAATCCTATTATGCTTGAGGGAAGCAATACACTATTTTCTCTTCTCATAAACCCACAGTGCTGTCTCAAAGTTTTGGTCCTTAGGAAGTGTCAACTTGGNCTTGCTGGAGTTCTTCACATGATTGAGGCACTGGCAGAAAACAGCTGCCTGGAGGAGCTTAATCTTGCTGATAATTCTTTTCCAAATGAACTTTCTGCTCTACAATTTGATTCATCGGTTAAAAGCTGCTCTCAAAACCAGGAGCAGAAACTTGATACTATGAAAGTTGATGATAATCGAGAGGTCTCTCTAAACACTGCCTACGATCAGCTGGAAGTTGCTGATAGTGAAGATATTCAGGTTAGAGTAGAAGCTGCTGCTTCTGGAATNGACGACAGCTGTGCCAGTTCATGTCAAAGAAATAATTCTTCATCTCCCGAGTGTCATTTCACTCAACAATTCTCAATTGCTATTGCTAAGGCAAAGGCCTTACAATTACTGGACCTTAGCAATAATGATTTTTCTGCACAAGCTGCAGAAACATTCTATGGTTCATGGACAANATTACGACCCCTTTCATGTCAGAAGCACATTACTGAGCAGATTATTCATTTCTCAACGAAGGAAAAGAGGTGCTGCGGAGTGAAACCTTGCTGCAAGAAAGTTTGATTTGTGCTCCCATGTTAGTATACTGACCAATGAATAAGAGGCAATTCTCCAGTCATTAAAATGGCGTTGCTTTATTTATAAAATGCATTCATCATCAACGGCTGTAATTTATGCTCGTCAATCGGAATGTCATGTAGTTTCATTTATCATGTAATGTAATACAAGAAGTTTATAAAGAATTCATAGTTTCATGTATATAATACTAGGAAATGCAGATTGACC

Protein Sequence

>Glyur000155s00012830.1
QLKIKYTLIDSFLTLQKKHLELARDANDLVEQQRASTQLGRTYHELFSRSDHDHNSIRNAKKYFKCAMDLAVTLKENPPNNKSSFLKEYVDAHNNIGMLEMDLDNLHEAQKILTRGLEICDEEEISEYDDGRSRLHHNLGNVYMELRIWDEARKNIKRDIQICNRIGHCQGEAKGYINLGEVHYRTQKYEEARSYYEKALALAKSLEDEDALVRQINQNIQTVKEAVKVMDEIKREEQNLKKLKRDIANVRGTSNERKCLLQQNASLDRLVEKARMISSWEKHCEFAKEKKKIARELCDKQRLGDSYLDVGESYQKLRKFKKAIKWYNKSWEMYKTISNLEGQALVKINIGNVLDSTHNWKEALDAFQESYRIAVEADLPDVQLSALENMHYSNMIRFDDEDETRRLKLLIDKLKKSNEEPEAKSMPEDCCSETDTEADDYLSNSGSDDFCFPKXISRSENLTHGEELKDDTPLMSLYQSIKGSSRKITXHKESXTNSTKQXEQSPKSLTXXTSNHXTAVGRKRVRIILSDDDDDEMECSSRKDNDCLLKDLPTPDATKSEESPCKIQVVSEYGSKRANNVEESSSSFKCWSTNTASKTGRHSRSLSNDIVAEPDFPSGSKCDTDISGKQNGVSYPMLHHSLNDVQQYITCRIGNDLIHVDLALCTAGDQLNIDSLKAVVACLYYLQFPAEKRSEGRQFLVYVFSVTVNNVSIEVGLLPIIQHIKCAGRDLESLETVEKLKEHLGNDMVEASIDGWIHKRLIKMYVDCCKELSEVPNIKVLKKLYNLEVSDDEIIVSDCDLQDLSITPLIDALQSQEAFAMLDISHNLLGNGTMEKLRKVFTASGQSYGDLTLDLHCNRFGPTALFQIGECPVLFARLEVLNISGNRLTDACGCYLSTILKNCTALCSLNVENCSVTSRTIQKIADALDSRSVLAHLCIGHNSPVSGNALVNLLSKLSTLKRFSELNMSGLKLGKPVVDTLCHLAGTLTLSGLILGGTGIGTEGAIKLAESLLKGTEELVKLXLSYCGLTSXYILNIXVXFXCSIXELNLEGNPIMLEGSNTLFSLLINPQCCLKVLVLRKCQLGLAGVLHMIEALAENSCLEELNLADNSFPNELSALQFDSSVKSCSQNQEQKLDTMKVDDNREVSLNTAYDQLEVADSEDIQVRVEAAASGXDDSCASSCQRNNSSSPECHFTQQFSIAIAKAKALQLLDLSNNDFSAQAAETFYGSWTXLRPLSCQKHITEQIIHFSTKEKRCCGVKPCCKKV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00155	288481	298629	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000155s00012830.1	PF13181.1	TPR_8	91	119	0.38
Glyur000155s00012830.1	PF13424.1	TPR_12	134	204	1.80E-14
Glyur000155s00012830.1	PF13424.1	TPR_12	303	374	4.20E-08
Glyur000155s00012830.2	PF13181.1	TPR_8	91	119	0.36
Glyur000155s00012830.2	PF13424.1	TPR_12	134	204	1.70E-14
Glyur000155s00012830.2	PF13424.1	TPR_12	303	374	4.00E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.357
SRR1783600	control	3.273
SRR1783602	moderate drought stress	2.537
SRR1811619	moderate drought stress	2.488

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.580
DRR006520	Root Summer glycyrrhizin high producing strain	2.505
DRR006521	Root Winter glycyrrhizin high producing strain	2.442
DRR006522	Root Winter glycyrrhizin high producing strain	2.518
DRR006523	Root Summer glycyrrhizin low producing strain	2.300
DRR006524	Root Summer glycyrrhizin low producing strain	2.470
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.460
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.368

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.366
SRR2868004	Drought Stress (root)	5.098
SRR2967015	Control (root)	4.141

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.597
SRR9715740	Leaf	0.251
SRR9715741	Leaf	0.249
SRR9715739	Root	0.485
SRR9715742	Root	0.895
SRR9715743	Root	0.946

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.077
SRR8749028	MeJA induced 9h	5.675
SRR8749029	MeJA induced 9h	4.348
SRR8749030	Uninduced	0.779
SRR8749031	Uninduced	1.008
SRR8749032	Uninduced	0.478

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.525
SRR8400027	Control - Root	4.423