Gene detail

Gene detail information of Glyur000155s00012816

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G09760.1	0	Plant invertase/pectin methylesterase inhibitor superfamily
NR	XP_004503950.1	0	PREDICTED: probable pectinesterase/pectinesterase inhibitor 51-like [Cicer arietinum]
COG	YP_004318102.1	8.00E-65	pectinesterase [Sphingobacterium sp. 21]
Swissprot	tr\|Q9LXD9\|PME51_ARATH	0	Pectinesterase 51 (Precursor)
trEMBL	tr\|G7LD86\|G7LD86_MEDTR	0	Pectinesterase/pectinesterase inhibitor {ECO:0000313\|EMBL:AET04725.1}

Sequence

Transcript Sequence

>Glyur000155s00012816.1
CCCCGTGAAGCGTTTCGCATCTCACGGTCACGACTCACGAGACAATATCCTATTCCTACATCCATAACCACGACACTAGTAATCACTGTAATGATATGATATAAAAATAAAATAAAAAGAACCATGATGAATTACCAAAAACAGAGCACTAGCGTCCAAATTTGGATGAACCAAAAAACAGAGTCACAAACACCACCTCCCATCCCACTCACTACTACATTATAAAACCAATCCACCATGACCCATTATCAACCCATTAAACCCGCAACACAATCACCGCCCTCACAAGATTCATGGCTTCTCTCCTCTGTCTTCTCTCTCTGTTCCTCTTCCTCACCCTCTCCTCCGCCTCCCACCACCACCACAACCACCCATCCTCTCCGGCGCCCACCCTCCCCACCAACGCCTCGCCGGCGATCCAGCAAGCCTGCAAGGCCACACGCTTCCCCCAGCAATGCGAATCCTCTCTCTCCCAATCCAAACACCTTCCTCCAAACCCAAACCCTCTCCAGCTTCTCCAATCCGCAATCGCCCTCTCCTCCGACGGCCTCGTCACCGCCCAATCCATGGTCAAGTCAATCCTCGACTCCTCCTCCGGCAGCCGCAACCGCAGCGTCGCCGCCACGACCTGCATCGAGATCCTAACCAACTCCCAGCACCGCATTTCCCAATCCAAAGACGCACTGCCACGTGGCAATACCAAGGACGCAAGGGCGTGGCTGAGCGCCGCCCTAGCCTACCAGTACGACTGCTGGAACAGCCTCAAGTACGCAAACGACACCCGCGAGGTGGGCCAAGCGATGTCGTTTATCGACTCCCTAATATCTCTCTCCAGCAACGCCCTGGGCATGGCGCAATCGTACGGCGCTTTCGGAAACGACATCGCGTCGTGGAGGCCGCCGGCCACCGAGAGGGACGGGTTCTGGGAGGCGTCCGCCGGGTCCGGCGGTGGGTCCGTCGCGGGGGTTCCGCCGAATTTGAAGCCGGACGTTACGGTGTGTAAGGGAGGAGGGAATGGGTGTCTTAAGACGGTGCAGGAGGCGGTTAACGCGGCGCCGGATAACGGCGCTGAGGGGAGGAGGTTTGTGATATACATAAAAGAAGGGGTATATGAGGAGACCGTTAGGGTTCCGTTAGAGAAGAGGAATGTGGTGTTCTTGGGCGACGGAATGGGGAAGACAGTCATCACTGGCTCTGCAAACGTGGGGCAGCCCGGGATGACAACTTACAACTCCGCCACAGTCGCTGTTCTTGGCGATGGATTCATGGCAAAGGATCTCACAGTCCAAAACACCGCAGGCCCTGATGCTCACCAAGCGGTNGCCTTCAGATTAGACAGCGATCTCTCTGTCATAGAGAACTGTGAATTCATAGGCAATCAAGATACTCTTTATGCTCACTCCCNGCGCCAATTCTACAAGTCATGCCGCATTCTGGGCAACGTGGATTTCATCTTTGGAAATTCAGCTGCAATCTTCCAAGACAGTCAAATCCTTGTTAGTCCCAGGCAAGTGAAGCCAGAGAAGGGCGAGAACAATGCCATCACGGCGCATGGCAGGACCGACCCCGCACAGACTACAGGCTTTGTTTTCCAGAACTGCTTGATCAATGGCACTGAGGAGTACATGGCATTGTATCACAGCAAGCCTGCAGTGCACAAGAACTACCTGGGCAGGCCATGGAAGGAGTATTCTAGAACAGTTTATATTAACTCTTTCATGGAAGCCCTTGTCACACCTCAGGGTTGGATGCCATGGAGTGGTGACTTTGCTCTTAAGACACTTTACTATGGGGAATTTGGGAATAAGGGACCTGGTTCTGATCCCTCTCAGAGGGTAACCTGGAGCAGCAAGATCCCTGCCGAGCATGTGTCGACGTATTCAGTGCAGAATTTCATTCAAGGAGATGAAACGAGTCCACCATCTCAGTAGTTAGCCCATCGTCGCAGGCGTGATCACAGGTCNATTAGGAGGCATCCGTAAACGGGGGAGTTTTATTCACCCCCTGTGTAATTACCAATTACTATTAGTAATACAATAATGATATCAGAATTTCGAAAACAAGGAAAAAAATTGCAAGGTAGATTATANACTGAGGGTTGGTCCACTCACTTTACGAGATGAGGATGACCCCTATTTGGAAGATCTATTGTTTTTTTTTTTAATTAATAAATGGTTGTTTACATAATGAAGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00155	208423	211611	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component
GO:0005618 cell wall

molecular_function

GO:0004857 enzyme inhibitor activity

GO:0030599 pectinesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000155s00012816.1	PF04043.10	PMEI	37	186	2.20E-22
Glyur000155s00012816.1	PF01095.14	Pectinesterase	232	538	7.70E-123

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	90.954
SRR1783600	control	91.874
SRR1783602	moderate drought stress	37.751
SRR1811619	moderate drought stress	38.266

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	52.728
DRR006520	Root Summer glycyrrhizin high producing strain	52.120
DRR006521	Root Winter glycyrrhizin high producing strain	19.169
DRR006522	Root Winter glycyrrhizin high producing strain	17.795
DRR006523	Root Summer glycyrrhizin low producing strain	35.108
DRR006524	Root Summer glycyrrhizin low producing strain	33.341
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.388
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.065

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.118
SRR2868004	Drought Stress (root)	101.764
SRR2967015	Control (root)	41.339

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.325
SRR9715740	Leaf	15.661
SRR9715741	Leaf	9.240
SRR9715739	Root	118.045
SRR9715742	Root	84.625
SRR9715743	Root	82.581

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.766
SRR8749028	MeJA induced 9h	19.176
SRR8749029	MeJA induced 9h	15.006
SRR8749030	Uninduced	0.964
SRR8749031	Uninduced	0.487
SRR8749032	Uninduced	0.415

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	135.464
SRR8400027	Control - Root	117.238