Gene detail

Gene detail information of Glyur000155s00012813.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18640.1	4.00E-40	Zinc finger C-x8-C-x5-C-x3-H type family protein
NR	XP_004503948.1	0	PREDICTED: zinc finger CCCH domain-containing protein 55-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q9LIH5\|C3H38_ARATH	4.00E-42	Zinc finger CCCH domain-containing protein 38
trEMBL	tr\|G7LE04\|G7LE04_MEDTR	0	Zinc finger C-x8-C-x5-C-x3-H type family protein {ECO:0000313\|EMBL:AET04726.1}

Sequence

Transcript Sequence

>Glyur000155s00012813.1
GAGCCCGCAGCCTTGTTGAAGAAACGGCAAGCTTCACTATGCCACTCCCAGCCTCCATCACCTTATCCGATTTCTCTAACAAGCGAATCACATGCTTTCTTCTACTCGCGTCTCTGTAATTGTACTGAAGCCTAGGATTTCTCCTCGACTCCGACGCTCCTCTGTAGTTCACTCAGCACTCTGCATTAACCAAAGTGAAGCTTTAAGGCTTTGGGGAGTGAGATGAGCGGAAGTAGCAGAAAGCTCTCTTCAAAGTGGGATTCTAGAGATGAACCTGAATTTGCACCCGATAGTGTTGCTAATAGCAATAGTTCAAGGTGGTCCTATTTGGAAAGAGATGATATTTTAAAACCTAGAATGGGATTTTCATGCAAGGAACCTTTTTCTGGAGNCAGAGGTTCAAATAAGGATGATTTTAAGAATAAAGACTACAAAGTTTTGGATGCAACAATTGCACAGGATACTGATGGAAGTTACAACATGGAAATGTCTCCAGGGTTTGAGGAATGGAAAAATAAGAAGTACAGTCAATCCCCAAAAAATGGTCACAGCAGGTCTGTCAGTAGTAGTCAGAGTAGGAGCAGGAGTCGAAGCCCTCCACGTGGTTTTAGGTGGGATTCAGGGGTCAATGGTGGAAATAGAATGAGGTCTGGTGTATTGACACGACCATGTAGAGATTTTGCTGTTGGGAAATGCAGAAGAGGCAGCCATTGTCATTTCCTTCACCATGATAAGCAAAATTACGAGGATAGCCGGGAAAGTAGACACAGGCAAGATGAAGCTCCCAGATATTCAACTCCCTATGAGAGTGGGGAATATTCTCTTACGAATGGAAGATCTGATGGGTTTGGTAAAGTTTCTGCGGATGGATCATCTAGGGAAAGGGAAATTGATAGAAGAGGTATGGAGAGTTCTTTAAAGCAGGGTGGTCGGCATTATCCAAACCACATTGGTGATACTCCTTGCAAATTTTTTGCTTTTGGGAATTGTCGGAATGGTAAAGATTGTAGATTTTCTCATGATAGGCAAGCATGTAGGAGCCCTGGTAGAAGATTAAGGGATGAAAGGTCAAGGAGTAATCAAGGTGAAGATCAGGCGTTGGATAGACCAAAATTGAGTGATTCAGTTAGTCATAATGTAAGGCAAAGAGATGATAGATGGGGTTCAGATGGCAGTATGGCTGATGTAGATAAAGTTTGGAATGGTCCAAAACAGAATGATTTAGTTGCTGTCNCTGATACCGCAAAGCTGGTTGAGGACAACAAACGTGGAATTATGGGTGCCCCAGAACCTANATTTATTGCTAGGCCAATGAGTGGTGGATGGGACCATGGCTTAGATAAGAACAGAGTGCATAACGAATCACCATTTTCAATTGATAAGAAGGAAGCCAACTGTTGGAGGGCAGAAAATGCAATTGACAACATTCCCATTTCCCAGTCAGCAGATAGAGGCATTTGGCCTGGTGATGAAAAAATGTCTCCTGATTGGAATTTTGGTGTGGGATCTTCCAGCCATATTAAAGAAGAGCATGGGCAGAATAAGCAACAAGTTGCTCCAGGACAAGGACTTAATCAGAATGCTCAGAATGTAACTGCTTTGCATTCTTCAAGCTGTCATGCGGTTGGACAGAGTCAAGCAGCAGTTTCCATTGTTCCTCCAAGAGAAAAAATTATTGAAGGTATGCAGAACCAGGAACTCTCTACTGAGAAAAAGTACATTTTTGAGCCAAATATCGTGGATGTAAGCCTATCACAAGTTGGTTCAAGAAATCCTCCAACTCAGAACGTAGTCAGCAAAGAACAGCTTGCTCAACTTACCTGCCTCTCAGCCTCTCTCGCACATATGCTTGGAACAGGTCGGCAGCTACCACAACTTTATGCTCCTTTAAATTCTCATGATGCAAAGGATACTCCCTTAGTAGGCAAAACTGAAGTGTCTAGCAATCCTGTTTCCACAACATTCATCAAGCAAGATCCTGCTATTGGAGTGAAGCAGTATGATCCAGAGTGTGATAGTATGGAGCCAAAGAATACTAATGCAAGTGGGATCCCCCCAACCTTTTCTCCCAGTATAAAGATTCCAAAAAATGCAGTAGAAATTCCATCACTGTTATCTAACCCAGGACAAAATCTTGATGATTCTTGTAAAACTGCCATTTCAAAAGAACAACTTGTCAAGAGTGAACATTCAATTCAGTTGCAGCAAGGTGAAAACATTGAGGCTGATAAGGAGAGTAATGAAATGGTAGCTGAAGAAAAGCTTAGTTCTCGATCTGAAAATAAAATCTCCGAANATAATGGTCCTTCGGAAAACATGGACCAAAATGTTGGACCTGATGAGGCCACGAAAATCAAGGATGTGAAGGGGATTCGTGCATTTAAATTTTCATTGGTAGAGTTCGTTAAGGAGCTCCTGAAACCAACATGGAAAGAAGGTCGAATCACCAAAGAAGATTATAAAGCAATTGTGAAGAAAGTTTCTGATAAAGTAACTGGTACAGTGCCGCGGGTACATATTCCTCAGACACAAGAGAAAATTGACCGCTATTTATCACTTTCGAAACCAAAGCTTAACAAACTTATACAGGCGTATGTGGAAAAGGTTCAGAAGGCGTAGTGCAACGCCAACTATAGAAATTTGGCCATGTAATCTGTTGGCTATATTTTGCTAAATTATTGTTTTACTTGTGTATTATGTTTCTGTATTGCTTGCTACAAAAGAAACCCCCCTCCCCCCATCCGTTAGATCAGTTGATAGTATAATTGAGTAACCAAGCAGCTCGTGTACATATAAACTCGGAGCTGTTTTTTGTCTTAATTTTTTTTTCCTGGGAAGAATTGTGGGTGCCATGTGCTATAGGACATTAGTTTACAACCCTAACATTAGGCAACTGTTATGCTTTATTTGGGTTAATTTTAATTTTATTTTACTTGTTTGATGCAAGTAAGGGAAGACG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00155	193328	202547	-

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000155s00012813.1	PF00642.19	zf-CCCH	147	169	0.0002

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.654
SRR1783600	control	13.747
SRR1783602	moderate drought stress	17.666
SRR1811619	moderate drought stress	17.695

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.495
DRR006520	Root Summer glycyrrhizin high producing strain	16.517
DRR006521	Root Winter glycyrrhizin high producing strain	15.845
DRR006522	Root Winter glycyrrhizin high producing strain	15.322
DRR006523	Root Summer glycyrrhizin low producing strain	19.393
DRR006524	Root Summer glycyrrhizin low producing strain	19.063
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.132
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.109

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.665
SRR2868004	Drought Stress (root)	21.542
SRR2967015	Control (root)	23.452

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.461
SRR9715740	Leaf	17.745
SRR9715741	Leaf	16.017
SRR9715739	Root	2.278
SRR9715742	Root	10.960
SRR9715743	Root	10.872

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.042
SRR8749028	MeJA induced 9h	21.228
SRR8749029	MeJA induced 9h	17.645
SRR8749030	Uninduced	15.530
SRR8749031	Uninduced	15.601
SRR8749032	Uninduced	12.820

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.784
SRR8400027	Control - Root	18.567