Gene detail information of Glyur000155s00012809 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G64630.2 | 9.00E-171 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_003525118.1 | 0 | PREDICTED: chromatin assembly factor 1 subunit FAS2-like isoform X1 [Glycine max] |
| COG | YP_003300732.1 | 2.00E-18 | metallophosphoesterase [Thermomonospora curvata DSM 43183] |
| Swissprot | tr|Q9SXY1|FAS2_ARATH | 0 | Chromatin assembly factor 1 subunit FAS2 |
| trEMBL | tr|I1K4Y3|I1K4Y3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G32430.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00155 | 162224 | 170854 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000155s00012809.1 | PF00400.27 | WD40 | 13 | 41 | 0.0027 |
| Glyur000155s00012809.1 | PF00400.27 | WD40 | 58 | 92 | 0.00039 |
| Glyur000155s00012809.1 | PF00400.27 | WD40 | 102 | 140 | 2.50E-05 |
| Glyur000155s00012809.1 | PF00400.27 | WD40 | 145 | 181 | 4.60E-06 |
| Glyur000155s00012809.1 | PF00400.27 | WD40 | 338 | 364 | 0.0045 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.028 |
| SRR1783600 | control | 4.100 |
| SRR1783602 | moderate drought stress | 4.701 |
| SRR1811619 | moderate drought stress | 4.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.243 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.133 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.877 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.541 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.996 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.977 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.322 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.100 |
| SRR2868004 | Drought Stress (root) | 5.041 |
| SRR2967015 | Control (root) | 4.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.712 |
| SRR9715740 | Leaf | 1.614 |
| SRR9715741 | Leaf | 1.330 |
| SRR9715739 | Root | 0.840 |
| SRR9715742 | Root | 2.645 |
| SRR9715743 | Root | 2.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.207 |
| SRR8749028 | MeJA induced 9h | 10.020 |
| SRR8749029 | MeJA induced 9h | 15.092 |
| SRR8749030 | Uninduced | 9.970 |
| SRR8749031 | Uninduced | 6.021 |
| SRR8749032 | Uninduced | 5.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.487 |
| SRR8400027 | Control - Root | 5.989 |