Gene detail

Gene detail information of Glyur000155s00012806

Functional Annotation

Database	Orthologs	E value	Annotation
NR	AET04734.2	0	cysteine desulfurylase [Medicago truncatula]
COG	NP_293754.1	2.00E-148	aminotransferase [Deinococcus radiodurans R1]
trEMBL	tr\|G7LE12\|G7LE12_MEDTR	0	Cysteine desulfurylase {ECO:0000313\|EMBL:AET04734.2}

Sequence

Transcript Sequence

>Glyur000155s00012806.1
ATGTATTACAATATTAACTTGATGTGGATGAAGGTAGAGCAGATATTACCAAAGAAACTCTGCATAGCTCAAAGGAAGCAGAGCAAGGCCAATAATAACGAGGTCGACATGATTTCATCATCCAAAACAAATAGCATACCCGAAAGTGAAATTTGCAACCACTCTGACTCCGAATCCTTTAAGATGTTAGTGGAGACGGGACTGCCATGTAACATTGAAACTGTGGAAGAAAAGCTGTGTTGGGTGAGGTCACAGATCATAGGTAACGATGTGGAGTTCAACTCTCCTTTTGGTAGACGAAANCTTGTTTATGCTGATCACACGGCTTCAGGTCGCAGCCTTCACTACATTGAAAACTTCATCGCNAATCATCTTCTGCCTTTCTACGAGCAGATATTACCAAAGAAACTCTGCATAGCTCAAAGGAAGCAGAGCAAGGCCAATAATAACGAGGTCGACATGATTTCATCATCCAAAACAAATAGCATACCCGAAAGTGAAATTTGCAACCACTCTGACTCCGAATCCTTTAAGATGTTAGTGGAGACGGGACTGCCATGTAACATTGAAACTGTGGAAGAAAAGCTGTGTTGGGTGAGGTCACAGATCATAGGTAACGATGTGGAGTTCAACTCTCCTTTTGGTAGACGAAACCTTGTCGCAGCCTTCACTACATTGAAAAACTTCATCGCTAATCATCTTCTGCCTTTCTACGGCAATACCCACACTTGCGACAGTTATGTTGGAAACAGGACAACAAAAATGGTGCACGAAGCAACCGAGTACATAAAGAAATGCTTAGGCGGTGGAAAAGACNATGCACTCATATTCTGTGGCTCGGGCACCACTGCAGCCATTAAGAGACTTCAAGAAGTAATGGGAATCGCCGTGCCCTCCATTTTGAGGGAAAGAGTATTAAGGAACCTCAACGCACAAGAGAGATGGGTGGTTTTTGTTGGACCGTATGAGCACCACTCCAACCTGCTTTCTTGGCGACAAAGCCTCGCTGAGGTGGTNGAGATTGGCCTAGATGACAATGGGTTGTTGGACATGGAAGCNCTCAAGCTACAACTTGAAGCCTACANAAATACCAACCGACCCCTGTTGGGATCTTTCTCTGCTTGTAGCAATGTCACGGGAATCTACTCAGATACACGAGCAATTGCTATGCTTCTTCACCAATACAAAGGGTTTGCATGCTTTGATTTCGCAGCAAGTGGTCCATATGTGGAAATTGACATGAGGTCAGGGCAGATCGATGGCTATGATGTTGTGTTCCTTAGTNCACATAAGTTTCTCGGGGGTCCTGACTCTCCGGGAGTGCTCCTAATGAACAAGACCCTCTACCAATTAAGATCTTCACCACCATCGACTTGTGGAGGTGGAACTGTCACTTACGTTAATGGCTTCAATGAAAAGGATACATTGTACTTGGAGAACATAGAGGAAAGGGAAAACGCAGGCACCCCACCAATAATTCAAATTGTGAGAGCGGCATTGGCATTTTGGGTGAAAGAGTACATCAGCTACGAAGAGATTGAAAAACGGGAACAACTGTACATTAACAANGCACTTAAGAGGCTCAACTCCAACCCAAACATTGAGATTCTCGGGAACTTGAGCACCAAAAGGCAAGCCATATTGTCATTTGTCATTTACACTACCACCAATTCTTTATCAGCTAGTTGGGGCAATGAACAGCAAAATAGTATTCGTAACCAAAACCAGGNCAATAAAAGAGGTAAGCCACTTCATGGCCCTTTTGTTGCAACATTGCTAAATGATCTCTTTGGCATCCAAGCTCGAGGTGGGTGTGCTTGTGCTGGACCTTACGGCCACCAATTGCTTAACATAAAAAAGTCTCATTCGCTTGCTATTAAATCAGCAACTCAAGAGGGTTATATTGGAGTAAAACCTGGATGGACCAGAGTTAGCTTTCCTTATTACATGGACGTGGATGATATTAGGTTCATTTTAAATGCTATAGAGTTTATAGCCATGTATGGCCAGCGATTCCTTCCCCTTTACAGCTTCGATTTGAGAAATGGTAGCTGGAGAATAAGGACACAGAAACTTGACACTATAATCAAGGAAAAGAAATGCAACTTTGGAGAAACTCCACAGAAAATAAAGACCTTCTACTCCCTCCTAATGTTGCGTTACATAAACAATATCATCGCACAACACTTTATTAATCAGTTCTTGCCGATGGAGTTAGAGCAGCCTTTGTTGGCAGAGACACCCATATTAGCCGAGCCATGCATCATAGCTCAGAGCCAGAAGAACAAGGCCAGTAATGATGTCTCTGTTTTATCCAAAACAAGCAGCACATCAGAAACACCCCATCATGACTTTTGCAACCATTCTGAGTCCTTCAAGAAGCTCGTGGAAATGGGCCTGCCTTGTAATGAATCTTTGGAGGAAAAACTGTCTTGGTTGAGGTCCCAGATCATAGGTAACGATGCAGGGTTTGATTCTCCATTTGGAAAACGATCACTTCTCTATGCTGATCACACTGCTTCAGGCCGCAGCCTTCACTACAATGAAAATTTCATCACCAATCATCTTCTTCCTTTCTATGGTAATACTCACACGTGTGATAGTTACGTGGGAAGCAGGACAACAAAAATGCTACACGAAGCAACCGACTACATTAAGAAATGCTTAGGTGGTGGGGAGGATGATGCACTCATCTTCTGTGGCTCAGGCACAACTGCAGCCATCAAAAGGCTTCAAGAAGTAATGGGAATCACTGTGCCCTCTATTATGAGGGAGAGGATTTTAAATAGCCTCAACGAGGAAGAGAGGTGGGTGGTTTTCGTTGGACCACATGAACACCATTCGAACCTCCTTTCTTGGAGGCAGAGTTTGGCTGAGGTGGTAGAGATTGGACTTGATGACAATGGGTTGTTGGACATGGAAGCTCTCAAGCTACAACTTGAAGCCTACAAAAATACCAACCGACCCTTGTTGGGATCTTTCTCTGCTTGTAGCAATGTCACGGGAATCTACTCAGATACACGAGCAATTGCTATGCTTCTTCACCAGTACAAAGGATTTGCATGCTTTGATTTTGCAGCAAGTGGTCCATATGTGGAGATTGGTATGAGATCAGGCCATAGGGATGGCTATGATGCTGTGTTCCTCAGTCCACATAAGTTTCTTGGTGGTCCTGACTCTCCAGGAGTTCTCCTGATGAACAAGGCTTTGTACCAGTTGAGATCTTCACCCCCATCGACGTGTGGAGGTGGAACTGTCACATATGTCAATGGATTCAATGAACAGGACACATTGTANTTGGAGAACATAGAGGAGAGGGAAAATGGGGGAACTCCTCCAATAATCCAGACAGTGAGAGCAGCATTGGCATTTTGGGTGAAAGAGTACATTGGCTACAAAGAGATCGAAAAACGGGAACAAATGTACATTAACAAGGCACTCCAGAGACTTGTCTCCAACCCCAACATTGAGGTTTTGGGAAACTTAAACGCCAAGCGACAAGCTATACTGTCATTTCTTGTCTACTCTACAACCAACTCTTCCTCAACTGGTTGGGGAAATGAGTGGGATAATGGTAGCCAAGAACATGAAGAGGAACTTAATTTGTGGCAAGAAATGGGGAACCAAAGAGGTAAGCCACTCCATGGCCCTTTTGTTGCCACATTGCTTAATGACCTCTTTGGTATTCAAGCTCGAGGTGGGTGTGCTTGTGCTGGACCTTATGGTCATGAATTGCTCAACATCAACAAATATCAATCACTTGCTATTAGATCAGCAGTTCAAGAGGGCTATATTGGAGTGAAACCCGGATGGACCCGAGTTAGTTTTCCTTATTACATGAGTGAGGAGGATTTTGAGTACATTCTGAGTGCTATAGAGTTTGTAGCTGTTTATGGCCAACGATTCTTTCCTCTGTACAACTTCGATTTGAGGAATGGCAGCTGGAGAATAAAGACANAGAATTTTGAGGCATTAAACAAGGAAGACATTAAACAAAGTTTGGCTGTAAGAAGGAACCAATCTTATTTTGATGTGGCCAGATATATTGCTAGTAGCCTCCCCAAGTTCCCTCCTCAGGGTGCNTTACAGGGGGACATGGATCCCAATACACTCTGCTTTAGAGTAAAAGACTCTAACTTGCATAAATTGATTTTTGCAATCTTAGCATTGAACTCAAAATTTGGAGATCTACAAAACCCCTGTGATTATTTTATTACTTTTTCAATCGCTGAAAATTTTCTTTGGATTTTTGAACAAATTGGACGTTGTATTCCTATGGGTTCATGA

Protein Sequence

>Glyur000155s00012806.1
MYYNINLMWMKVEQILPKKLCIAQRKQSKANNNEVDMISSSKTNSIPESEICNHSDSESFKMLVETGLPCNIETVEEKLCWVRSQIIGNDVEFNSPFGRRXLVYADHTASGRSLHYIENFIANHLLPFYEQILPKKLCIAQRKQSKANNNEVDMISSSKTNSIPESEICNHSDSESFKMLVETGLPCNIETVEEKLCWVRSQIIGNDVEFNSPFGRRNLVAAFTTLKNFIANHLLPFYGNTHTCDSYVGNRTTKMVHEATEYIKKCLGGGKDXALIFCGSGTTAAIKRLQEVMGIAVPSILRERVLRNLNAQERWVVFVGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDMEALKLQLEAYXNTNRPLLGSFSACSNVTGIYSDTRAIAMLLHQYKGFACFDFAASGPYVEIDMRSGQIDGYDVVFLSXHKFLGGPDSPGVLLMNKTLYQLRSSPPSTCGGGTVTYVNGFNEKDTLYLENIEERENAGTPPIIQIVRAALAFWVKEYISYEEIEKREQLYINXALKRLNSNPNIEILGNLSTKRQAILSFVIYTTTNSLSASWGNEQQNSIRNQNQXNKRGKPLHGPFVATLLNDLFGIQARGGCACAGPYGHQLLNIKKSHSLAIKSATQEGYIGVKPGWTRVSFPYYMDVDDIRFILNAIEFIAMYGQRFLPLYSFDLRNGSWRIRTQKLDTIIKEKKCNFGETPQKIKTFYSLLMLRYINNIIAQHFINQFLPMELEQPLLAETPILAEPCIIAQSQKNKASNDVSVLSKTSSTSETPHHDFCNHSESFKKLVEMGLPCNESLEEKLSWLRSQIIGNDAGFDSPFGKRSLLYADHTASGRSLHYNENFITNHLLPFYGNTHTCDSYVGSRTTKMLHEATDYIKKCLGGGEDDALIFCGSGTTAAIKRLQEVMGITVPSIMRERILNSLNEEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDNGLLDMEALKLQLEAYKNTNRPLLGSFSACSNVTGIYSDTRAIAMLLHQYKGFACFDFAASGPYVEIGMRSGHRDGYDAVFLSPHKFLGGPDSPGVLLMNKALYQLRSSPPSTCGGGTVTYVNGFNEQDTLXLENIEERENGGTPPIIQTVRAALAFWVKEYIGYKEIEKREQMYINKALQRLVSNPNIEVLGNLNAKRQAILSFLVYSTTNSSSTGWGNEWDNGSQEHEEELNLWQEMGNQRGKPLHGPFVATLLNDLFGIQARGGCACAGPYGHELLNINKYQSLAIRSAVQEGYIGVKPGWTRVSFPYYMSEEDFEYILSAIEFVAVYGQRFFPLYNFDLRNGSWRIKTXNFEALNKEDIKQSLAVRRNQSYFDVARYIASSLPKFPPQGALQGDMDPNTLCFRVKDSNLHKLIFAILALNSKFGDLQNPCDYFITFSIAENFLWIFEQIGRCIPMGS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00155	129966	156120	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000155s00012806.1	PF00266.14	Aminotran_5	231	655	3.30E-33
Glyur000155s00012806.1	PF00266.14	Aminotran_5	852	1174	2.80E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.009
SRR1811619	moderate drought stress	0.009

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.302
DRR006520	Root Summer glycyrrhizin high producing strain	0.272
DRR006521	Root Winter glycyrrhizin high producing strain	99.671
DRR006522	Root Winter glycyrrhizin high producing strain	97.431
DRR006523	Root Summer glycyrrhizin low producing strain	0.250
DRR006524	Root Summer glycyrrhizin low producing strain	0.257
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.195
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.165

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.073
SRR2868004	Drought Stress (root)	0.126
SRR2967015	Control (root)	0.157

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.039
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.074
SRR9715739	Root	0.093
SRR9715742	Root	0.213
SRR9715743	Root	0.189

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	156.716
SRR8749028	MeJA induced 9h	324.762
SRR8749029	MeJA induced 9h	320.099
SRR8749030	Uninduced	126.580
SRR8749031	Uninduced	380.256
SRR8749032	Uninduced	402.123

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.980
SRR8400027	Control - Root	1.001