Gene detail

Gene detail information of Glyur000155s00012802.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G09330.4	2.00E-74	NAC domain containing protein 82
NR	XP_007159836.1	1.39E-153	hypothetical protein PHAVU_002G271700g [Phaseolus vulgaris]
Swissprot	tr\|Q84K00\|NAC78_ARATH	2.00E-73	NAC domain-containing protein 78
trEMBL	tr\|V7CRD6\|V7CRD6_PHAVU	5.00E-154	Uncharacterized protein {ECO:0000313\|EMBL:ESW31830.1}

Sequence

Transcript Sequence

>Glyur000155s00012802.1
AGCGTAGAGAGAGAGAGTCTGTGGTTTCCGTCGATTGAATCGTTCGATCTCCGATTTAGGGTTTCACTGTGCCGATGTCTTTTTACCTCCAAATTGGATCCTCCTTCTCATCCATTGTTGTGCGCCTCTCCTGCTTTATGAACCGCGGGAGGCTTTGGTGTTCTTCCAAGATATTGTTTCGCCATTGGACTTGACATGTCCCTCACACTCCGCCAATTTTAGGGTTTTCTTTGCCCTTTTCTCATTTTGCGCGTAGTCATTGTTTTCCTTCAATTCATNATAACACACTTCATTCTCTGAAGTAATAATCATTTTCGCGGGGTACGAGGTTTCGATTGAAAATTTTAAGGAATAGCTTAGTTTTTGTGTGTTATTTTTTGGGGNGTTCTGAAGCAAGCGTTGTAGCATTGTGTTTTTTTTTTTACTATCGATTTGATTTGATGGCCAAAGCGAAATTGATTCCGGGATTTCGGTTCCATCCAACTGGAGTTGAGTTGGTTAAGTACTTTCTGAAGAGGAAAGTGTCGGGGAAAAAGTTCCATGATGGTTTCATTGCTGAACTTGACATATATAAGTATGCGCCTTGGGATCTCCCAGATAAATCGTGTCTGAGAAGTGGGGATTTGGAATGGTACTTCTTCTGTCCGAGAGAGAGGAAATATGGCAGTGGGGTAAGGATCAATCGAGCTACGGAAATTGGGTTTTGGAAAGCTACTGGTAAGGATAGAGCTGTTCAACACAATAATCAAACTGTGGGGATGATAAAAACGCTGATATTTCACACTGGGAAAGCACCTCGTGGGGAACGAACGGATTGGGTTATGCATGAGTACAGGCTTGAAGATAAGGACCTGGCTGACAAAGGAATTGCTCAGGATTCCTATGTAATCTGTAAGGTATTCCAAAAGGAAGGTCCTGGTCCCAGGAATGGTGCACAGTACGGGAGACCATTTAATGAGGAAGACTGGAATGATGAATTGGTGGGAATACCTTTCGCTGAATCGTCTGCACTAGTTCCCATTTTGCCTATGACAGATAATAGCTCTGTTCCAAATGACCAGAATCTACATGCTAGTGGACGTAGTGCAAATCCTTCATATCCAGTTAATCAAGCTGTTAATAATGATGATGATATTTTATCATTGCTTGATATTTTCAAAGAAGACGACACATTGCCTGAGCTTGCTAATGTTGATAATAATGGTCAAGAAAATATTGCTGAAGGTGTGCCTTTAAGTGACTTTTTGGATGGTTTGGGAGACCCGGATTACTGGGATTCTTTGGGGGGTTTCTCTTCTGGCCAGAATGCTGAATTTAACACAAACGGAATGGCTACTACGGGCGATGTCTTGGGGTTTGGTGGCGACTTGGATTTCCTAGAGTTGATTGACTTAGACTCTCCATTGTTCTGGCAGACCACACAACCTGAAAGTAGTCGGCATCCAGATAAATAGGTTGTTTTGGGTCTTTGGTTGGCCAATGATATTTTCACAGGCTTGAGCATGACACTAGTTTTTGGGCACTATTGCATCATCCCCATCAGCGTTTAATAAACTTGTTACTTATTTGGTGATTGACTCGTTCGGAGGCAAACACTCATTGGCTGAATTGGGTGGACCATATATATTTTTAAGTACGTAATGAATATAATAATTGGAGTATTATAATATTTAACCTATACTGTGACTAGAGTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00155	98550	101890	-

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000155s00012802.1	PF02365.10	NAM	6	134	1.20E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.184
SRR1783600	control	23.948
SRR1783602	moderate drought stress	17.469
SRR1811619	moderate drought stress	17.261

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	47.653
DRR006520	Root Summer glycyrrhizin high producing strain	46.396
DRR006521	Root Winter glycyrrhizin high producing strain	14.945
DRR006522	Root Winter glycyrrhizin high producing strain	14.354
DRR006523	Root Summer glycyrrhizin low producing strain	41.650
DRR006524	Root Summer glycyrrhizin low producing strain	41.132
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.617
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.082

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.419
SRR2868004	Drought Stress (root)	40.330
SRR2967015	Control (root)	45.037

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.245
SRR9715740	Leaf	38.121
SRR9715741	Leaf	39.740
SRR9715739	Root	11.188
SRR9715742	Root	28.931
SRR9715743	Root	26.417

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	95.171
SRR8749028	MeJA induced 9h	73.395
SRR8749029	MeJA induced 9h	70.314
SRR8749030	Uninduced	80.626
SRR8749031	Uninduced	61.459
SRR8749032	Uninduced	61.921

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.527
SRR8400027	Control - Root	37.939