Gene detail

Gene detail information of Glyur000155s00012798.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G53570.4	2.00E-144	mitogen-activated protein kinase kinase kinase 3
NR	XP_004503937.1	0	PREDICTED: mitogen-activated protein kinase kinase kinase 2-like [Cicer arietinum]
COG	NP_869262.1	3.00E-28	serine/threonine-protein kinase pknH [Rhodopirellula baltica SH 1]
Swissprot	tr\|Q9CAD5\|YODA_ARATH	2.00E-142	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|Q75PK5\|Q75PK5_LOTJA	0	Mitogen-activated kinase kinase kinase alpha {ECO:0000313\|EMBL:BAD12492.1}

Sequence

Transcript Sequence

>Glyur000155s00012798.1
TAAAAAGAAAAGAAAAGAAAGTTTTTCTCTCTCTAACTCTAATTCAATCTAATCCAATTCCAACTCCTCCTCCATCTCTCTTCCCCCCTTAGCTGTATGTAGCCTTTGTTGGTCCCTCCACCTCTTTCGTCGTTTCTTCACATTACAAAGAGAAATCACACACACAGCATTAGCAAGACCNATTCACAACACCTCTCTCACACCCACACACACTTACTCTGCTATTGTTCTTCTTATTCTTCTCCCAAAAAAATATATTCCATTTTTGGAAGTTAGAAAATGCCGGCGTGGTGGAGTAGGAAGTCGAGCAAGAACAAACAGGAGCGTGAAGATGTTGTTGATGATGATGAGGAAGAAGAAGAGCCACGTGGCGTGCTTCAATTCAATTTCATGAAATCTCCTATTACCTTAAGGAACGGTGGTGACAACAACAATAAGAATAAGAATAAGAATAAGAAGAAGGAGAAGACGAAGACGAAGAGTTTCGACGAGGTTTATCATCGGAATTCACCGAGGAGTCGCAGGGATTTCGAAGGCGCCGCCGCCGCCACTGAGAAGAAAGGGCTTCCGTTGCCTCTCCCAACAACAAACTGCGACGGATCTCCTTCTGTTTCTGGCTCCAGCATCAGCTCCTCTGCCTCTTACGACGATCACCCAATCTCTCCTCAATCCAATCCCAACATCAGAGGGCAAGAGGAGCTGAAGTTCAATGTGAGGTCAAAAAGCCCGGCTCATGGGTCAAGAGGACCCGCCAGCCCGACTTCACCTCTTCATCCAAGGTTGCATGCTTTGAGTCTTGACTCTNCTACCGGAAAGCAAGACGATGGAAGGAGTCAATGTCATCCATTGCCTCTTCCACCGGGATCTCCTACTAGCCNTTCTGCTCTTTCCAATGCACGGGCAAATGGACAGTTAGAAAACACTGCTGGTAATCTGTCCAAGTGGAAGAAAGGAAAGCTTCTAGGCCGGGGAACATTTGGGCATGTTTATCTGGGNTTCAATAGTGAAAACGGACAAATGTGTGCAATAAAAGAAGTCAGGGTTGTCTCTGATGATCAAACATCAAAAGAGTGCCTCAAACAACTTAACCAGGAGATAAATTTGCTTAATCAGCTTTCACACCCAAACATTGTTCAATACTATGGGAGTGAACTGGTAGAGGAATCGCTTTCTGTTTATCTGGAATTTGTCTCTGGTGGTTCTATCCATAAATTACTTCAGGAATATGGCGCGTTCAAGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTGCCTATCTACATGGAAGAAATACAGTACACAGGGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAACTAGCAGACTTTGGAATGGCTAAACATATAAATGCTTCCGCCTCAATGCTTTCATTCAAAGGAAGCCCATACTGGATGGCACCTGAGGTTGTAATGAATACAAATGGCTATAGCCTTCCAGTTGATATATGGAGCTTGGGATGCACAATTCTTGAAATGGCAANGTCGAGGCCTCCATGGAGTCAGTATGAAGGGGTAGCTGCCATATTTAAAATTGGAAACAGCAAAGATATGCCTGAAATCCCCGAGCATCTTTCAAATGATGCAAAGAATTTCATTAGGCTTTGTTTACAGCGGGAGCCATTAGCTCGCCCAACAGCCCATAAGTTACTAGACCATCCCTTCATTCGAGATCAATCAGCGACAAGAGCTGCAAATGTCAACATAACCAGAGATGCTTTCCCTTACACGTTTGATGGAAGCCGGACGCCGCCTGTTTTAGAGTCCCATTCCAATCGAACAAGTATAACTTCNCTTGATGGAGATTATGCCACAAAGTCAGCTCTTGCAGCTCCATGTGCAATACGGAATCCCAGAGATAACACTAGAATGATCACATCTTTACCGGTATCTCCCTCTTCAAGTCCATTGCGACAGCATGGAGCAGCACATAGGAGCTGTTTCCTTTCTCCTCCTCATNCAACTTACTCAATGATGGGACAAAATAGTTACACTCTGAATGACATGCCCTCTTATCCAATGAGATCAAATGCCACATTTACTCTTGATCCCTGGCATGAAACATCTCGATNCAAAGCACATACACCACCTGGTGGATCTCCAAGAATGAGATTCATTTGAGTTTATTGTAAATACCAATAGGTTCCCCACAGCATGCCTTGTTGTGGTTCAATCTGGACACTGAAGCACAAACTCATGTCCAAAAGATTCTGGTCCATTCTTCATCCATGAGAACCANATGACAGAACAAATGAAGGGACCCTTAGCTCTCAATGCATTGTAACAATTTCTTGATTNCTGTAAATGGAATGTACTTTGTGTTTGTAGTTACATTTATGTTGTATATTGCTAGTCCATGGCAGAAAAGAAGAAAAGAAAAATAAATTTTCANATCGACTCTGTTCATTTTACATTCGATAATTCTATTTGAGAATGGATACATGTATAGTTTGGTCTCAAGCCATCATCATAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00155	57024	63012	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000155s00012798.1	PF00069.20	Pkinase	222	478	1.00E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.179
SRR1783600	control	34.168
SRR1783602	moderate drought stress	34.571
SRR1811619	moderate drought stress	34.286

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.502
DRR006520	Root Summer glycyrrhizin high producing strain	33.644
DRR006521	Root Winter glycyrrhizin high producing strain	70.613
DRR006522	Root Winter glycyrrhizin high producing strain	68.910
DRR006523	Root Summer glycyrrhizin low producing strain	51.745
DRR006524	Root Summer glycyrrhizin low producing strain	52.454
DRR006525	Leaf Summer glycyrrhizin high producing strain	35.041
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.364

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.012
SRR2868004	Drought Stress (root)	31.204
SRR2967015	Control (root)	39.323

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.538
SRR9715740	Leaf	38.725
SRR9715741	Leaf	60.604
SRR9715739	Root	16.165
SRR9715742	Root	71.581
SRR9715743	Root	59.584

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	50.980
SRR8749028	MeJA induced 9h	71.250
SRR8749029	MeJA induced 9h	76.354
SRR8749030	Uninduced	68.097
SRR8749031	Uninduced	67.305
SRR8749032	Uninduced	50.099

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.242
SRR8400027	Control - Root	39.513