Gene detail

Gene detail information of Glyur000155s00012796

Functional Annotation

Database	Orthologs	E value	Annotation
NR	AFK49314.1	6.04E-114	unknown [Medicago truncatula]
COG	YP_007095269.1	5.00E-17	tetratricopeptide repeat protein [Chamaesiphon minutus PCC 6605]
trEMBL	tr\|I3T9X2\|I3T9X2_MEDTR	2.00E-114	Uncharacterized protein {ECO:0000313\|EMBL:AFK49314.1}

Sequence

Transcript Sequence

>Glyur000155s00012796.1
ATGGTATTGGTGGGTGCATNCAGAGCACCAACCATTTCCCATCTTCAAACCAGAATTCAGAATTCTCAGAGCAAAGCATCACCACCACCCATTTTCAGAGCTCGACTTCCAAACAGGCGTTTGGTCCTCTTCTCTCTGCCCCTCTCTGGTTTCCTTCTCCTTCCTGTTCCTGCCTTTGGTGAAGGTGACAGTGCCACTAGTAACAAATCTCAACCTGGGTCTTCTTCAAATGCTGCCACAGAGTATGATCCAGTAACTTCTTCTGAAAGAGATGCCAGTGCTTTAATCTCACAGAGAGTGTCTCGAGGAGTGGAGTTGTTGGAGAAAGGGAGAGAATTGCAGGCTCAGGGTGACTTTGATGGCGCTCTTGACTACTTTTCTCAGGTGATTGAAAGCTACAAGGACCTGGCATTCTCAGAGTACGCGAGGGTAGGAAGAGCATTGGCTCTGTATGAAGTTGGTGACAGAGAAGAAGCAATTGCAGAGATGGAAGACGTTTCAATATCTCTAAAAGGTTATCCGGAAGTACATGCAGCTCTAGCAGCAGCCTTATATGCAGATAAGCATGCCCCATTGCTTGCTGAAAACCAGTTTACTATTGCAACTCTGCTTGATCCCCATTTTACAGACCTTTCATATGTTAGAGAGACAAAGCACTGGCCTCCAAAGTTGATTAGTTCTCTGAAGCATTTCATTACACTGTCTTAAGACCCTTATAGGATATTTATTTATNCATGTTGCTTCACACCCATACTAAGCAATGCCAGCTATATGAAAACCTTCTCTTAAGTTGGACGTTTACAACTTCAAATGTATACCCTTGTTTATTTTTTTATTTTTTTATTTTCCTATTTTAACCCTTGTGGTTCTGAAATGTAAATCAACTGTGACATACAATTTTTTGACAGTTGTCTTCCAATGTTGCATAGGAAGGTATTTCCCAGGATTTACAATATAACTTCTGATTCAGAAGCTAGGGATTGTTCAACTATAATGCTAAATTGTTCTAATGTTGCAATAAGCTTTTNATAGGAGATTCACTGCTGATATGAATTCTAAGCCACTGAACGAGTGGTATAAGGTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00155	43850	46544	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000155s00012796.1	PF13414.1	TPR_11	105	164	3.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.451
SRR1783600	control	10.487
SRR1783602	moderate drought stress	10.920
SRR1811619	moderate drought stress	11.108

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.217
DRR006520	Root Summer glycyrrhizin high producing strain	4.478
DRR006521	Root Winter glycyrrhizin high producing strain	15.527
DRR006522	Root Winter glycyrrhizin high producing strain	16.016
DRR006523	Root Summer glycyrrhizin low producing strain	5.735
DRR006524	Root Summer glycyrrhizin low producing strain	5.700
DRR006525	Leaf Summer glycyrrhizin high producing strain	65.359
DRR006526	Leaf Summer glycyrrhizin high producing strain	65.073

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.591
SRR2868004	Drought Stress (root)	0.658
SRR2967015	Control (root)	1.144

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.256
SRR9715740	Leaf	36.059
SRR9715741	Leaf	13.398
SRR9715739	Root	2.489
SRR9715742	Root	3.120
SRR9715743	Root	2.885

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.403
SRR8749028	MeJA induced 9h	0.984
SRR8749029	MeJA induced 9h	1.110
SRR8749030	Uninduced	0.651
SRR8749031	Uninduced	0.283
SRR8749032	Uninduced	0.262

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.931
SRR8400027	Control - Root	10.286