Gene detail

Gene detail information of Glyur000155s00012793

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G13620.1	0	cation/hydrogen exchanger 15
NR	XP_003630280.1	0	Cation proton exchanger [Medicago truncatula]
COG	YP_003950769.1	9.00E-85	cation transporter/universal stress family protein [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|Q9SIT5\|CHX15_ARATH	0	Cation/H(+) antiporter 15
trEMBL	tr\|G7LE34\|G7LE34_MEDTR	0	Cation/H+ exchanger 3 {ECO:0000313\|EMBL:AET04756.1}

Sequence

Transcript Sequence

>Glyur000155s00012793.1
CCGTCACGTTTAATTGCAAATTGCAATCACATTTACTTCCAGAATAATTTTATCAATTCCCAGGGGAGATTTTTTACATTGATAAAACGCCGGAAGTCCGAGACCTATCCCACTGAACGAGACTTCCGTTGGAGCATTGCCGCCGTTTGCCGCCGTCCACCGCCGCCGCCGAGGGAGGCCAGCCAACGTCGCACGGCTGGACCAGTGGCTGTGATCTTTCCAGGAGGGATAATATTAGGCCCTTCAGTGCTTGGGCGAAATAAGAAATTTGCTGACACGGTATTCCCTCTGAAAAGTGTGATGGTGATTGAAACAATGGCAAATGTTGGTCTCCTTTATTTTCTGTTCTTGGTGGGAGTGGGAATGGATGCATCTGCACTGAGACGCATAGGTAGGAAAGCAATGAGTGTAGCAATAGCCGGCATGGTGTTGCCATTCGCCATTGGAGCTCTATTCTCTATTCTCTTGATGAAAGAAAATGAAAGAGGCGCAAATGCAGGCGCTTTCGTCATAACGCTTGGCGTTGTTCTCTCTGTCACGGCATTCCCCGTGCTTGCGAGGATCCTTGCAGAGCTAAAACTCATCAACACAGAGATGGGAAGGGTTGCCCTTTCATCTGCGCTCATCAATGACGTATGTTCATGGATATTGTTGGCNCTAGCCATTTCCATGTCCGAGAATGAGAAGATCTCTATTGCTTCCCTAATGGTTTTGTTGTCAAGTGCAGCATTTGTAGCCTTCAACGCCTTTGTTGTACGGCCTGTGATCATGTGGATAATAAGGAAAACCCCAGAAGGTGAACCGTTTAGCGATTTCTATATATGCCTGATCTTGGCAGGTGTCATGATCTCGGGTTTCATCACAGATGCTATTGGGACTCATTCTGTTTTTGGGGCATTTGTGTTTGGTTTGACAATCCCAAATGGGCCACTTGGTCTCGCTCTTATGGAGAAGCTTGAGGACTTTGTCTCAGGGCTTTTGCTCCCTCTCTTTTTCGCCACTAGTGGACTAAAGACTGATATTGGCCTCATCAATGAGGCCTACACGTGGGCCATTCTAATCCTCCTTGTTCTCTTGGCTTGCATTGGCAAGGTTGTTGGAACTTTGATCGTTGCAGTTAGTTATCAAATGTCACTTACTGAAGGAGCTGCCCTTGGCATGCTTATGAACACAAAAGGCCTTGTTGAAATTCTTGTGCTTAATATTGGTAGGGATCAGAAGGTTTTGGATGAGGAAGCATTTGCAACCATGGTGATTATAACTGTACTAATGACCGGATTGATTGTACCTGGCATATCAATTATATATAGACCATCAAGGGGGTTCATATCTTACAAAAGAAGAACCATTCAGATGTCAAAAAAGGATGCAGAATTCAAGGTCCTAGTATGTATCCACACTCCCCGAAATGTCCCAACNATGATCAACCTCCTTGAAGCCTCTAACCCAACAAAGAAGTCTCCAATATGCATCTATGTGCTCCACTTGGTGGAACTCACTGGTCGTACCTCTGCCTTGCTCATTGTCCACAACTCTAGGAAACCAGACCACCCTGCCCTCAATAGGACTCAGGCTCAATCTGACCACATAATCAATGCCTTTGAAAACTATGAGCAGCGTGCTGCTCATGTGTCTATCCAACCCTTGACAGCAATCTCCCCTTACTCCACAATGCACGAGGACATTTGCAACTTGGCAGAGGACAAGCGTGTCGCCTTTGTAATCATTCCTTTCCATAAGCAACAAACGGTTGATGGTGGGATGGAAGCTACAAACACGGCATTCCGAACTGTCAACCAGAATGTGCTGGCCAATTCACCTTGCTCAGTTGGGATTCTAGTGGATAGAGGCTTGAATGGCTCCAACCGTTTGGTTGCAGATCAAGTGTCTCATCATGTGGCTGTTTTGTTTTTTGGAGGGCCAGATGATAGAGAGGCACTGAGCTATGGATGGAGGATGCTGGAGCATCCAGGAATAAGCCTCACTGTAATGCGTTTTGTTCCAGGGGAAGAAGTGATGCATGATAACCTCATGAATCCAGATAAACCAAGGGTACTGACAGTTGAGACAGATAAAGACACTGATAAGCAACTTGATGAGAAGTTTTTGCATTGGTTTATGATGAGTCATATGAATGATGATTCAATTGTTTACATGGAGAAGGTGGTGAACAATGGGGAGGAGACAGTGGCAGCAATAAGGTCATTGGGTGATGTTCATAGCCTTTTCATAGTTGGGAGAGGCCAAGGAATGGTATCACCNCTCACAGCAGGACTAACTGATTGGAGCGAGTGCCCAGAGTTGGGAGCAATNGGGGATTTGTTAGCATCATCAGATTTTGCAACCACTGCTTCGGTGTTGGTAGTGCAGCAATATGTTGGTGCTGGTGCAGAAGGAGATGGGTTAGGAACACCAGACCATACGGTGATGACTAATGAAGAATATGTCAATCACATGGGTCATAATTCAACACCACCAAGGGGTCATTCTGTGTTCAATACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00155	26820	31940	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0006813 potassium ion transport

GO:0006814 sodium ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005451 monovalent cation:proton antiporter activity

GO:0015299 solute:proton antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000155s00012793.1	PF00999.16	Na_H_Exchanger	74	428	1.30E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.945
SRR1783600	control	0.959
SRR1783602	moderate drought stress	0.655
SRR1811619	moderate drought stress	0.719

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.472
DRR006520	Root Summer glycyrrhizin high producing strain	1.271
DRR006521	Root Winter glycyrrhizin high producing strain	3.689
DRR006522	Root Winter glycyrrhizin high producing strain	3.686
DRR006523	Root Summer glycyrrhizin low producing strain	1.744
DRR006524	Root Summer glycyrrhizin low producing strain	1.778
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.464
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.475

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.437
SRR2868004	Drought Stress (root)	1.029
SRR2967015	Control (root)	0.920

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.008
SRR9715740	Leaf	0.054
SRR9715741	Leaf	0.029
SRR9715739	Root	0.012
SRR9715742	Root	0.069
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.126
SRR8749028	MeJA induced 9h	1.567
SRR8749029	MeJA induced 9h	2.431
SRR8749030	Uninduced	2.606
SRR8749031	Uninduced	3.659
SRR8749032	Uninduced	2.885

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.181
SRR8400027	Control - Root	0.203