Gene detail

Gene detail information of Glyur000155s00012792.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64530.1	4.00E-26	xylem NAC domain 1
NR	XP_003524308.2	4.60E-83	PREDICTED: NAC transcription factor 25-like [Glycine max]
Swissprot	tr\|A0SPJ6\|NAMB2_TRITD	9.00E-29	NAC transcription factor NAM-B2
trEMBL	tr\|V7CRF2\|V7CRF2_PHAVU	6.00E-77	Uncharacterized protein {ECO:0000313\|EMBL:ESW31845.1}

Sequence

Transcript Sequence

>Glyur000155s00012792.1
CTTTGCTGTTACCAAAAAAAAATGCTTCTTATCTTTGCTAAATAACTTAAATAGTCATGCACAATAATTTGATATGTTAACTTAAATAATGATCAATTACATTACAACGTTAACTTCTATTGTTNGCTTCCTTGGCGCCTTCAGCAGCTTTCTTGGCCGGCCCTACTAATTTTCCTATGGTGCTATTCCACGCAACTCAGATTTTCTACTGCCNACTCATTCCTTTTTCTGAATCACAATCAACCAAAAATATCTCTAAAATTTTCTCTTTTCTTTCTCTTGCTATATATAAGTATCTGCACATACATATATATAGTGACAAACATTATCCCAAGTGCCAAAGTCTCTGCCTTACAAACTAAAAATAAATAAANAAACAAAAATGATGGGAGCAAGTAGTACTGGAAGTGTGGATCTTCCTCCTGGGTTTTACTTCTCTCCAACAGATGAAGAACTCATCCTTCATTTTCTCTATTCCAAGGCTTCTCTACCATCCCATCCTAACATCATNCCTGATCTTGACTCCTCTGATCTGCACCTTGATCCCTGGCAATTAAATGGGAAAGCGTTGTCAAGTGGAAATCAACACTACTTCTTTACCCAAGTGAAGGAAAATAATAGATCAACAGAAAATGGGTATTGGAAGGAAATAGGAGTCACAAAACCTATAGTGACGTCATCAGCCGCTGATGAGAACAAAGTGGGGANGAAGAAGTATCTAGTGTTCTTCACCCTTCCACAGGGCACTGAAACCAGTTGGGTAATGGAAGAATTTCATATTTCCTCATCTGGGGGGTTAATTAACACATCTTGTGGAGTTACTACTACCCGNCCGGGAAGACGAAATATTAATCTTCCTGTAAGTGATCTTGTTTTGTTTATACAGGATCAGAGTCGGAGCAAATGGGTTTTGTGCAGAGTGTATGAAAAGAAGAGGTCNTCATCACAGAGCCAACAAGAAGGTTATAGCGATGACTATGAGGATGATAGTAGTGGAACAGAGTTGTCATGGCTCGACGAGGTTTTTATGTCCTTAGATGATGATGATGATGATGATCTTGATGAAACAAGCATGCCTGCCTAAAATTAATTAATTAGGTAATGAAAATTATGTTGATGTATATTAATTAGGATATCTTGCACTATAGAGTTAATTAGAATTTCTCATGAGTTCATTATATATGATGAAGGAGTCTCTATAGCATTTACATGTAAGAGCTAGCACAAAGATGAGTTTCTATTTAGGTTTAGGTAATGGCGATTTTCTCACAGAGGGGCAGGAAAGAAAGAAATTAAAAAAAAAAAACAGAGAGAAGATAAGAAATGTTACGAGTGATCAAAATGGAAAAGAAATAGTGAAATAGAAAAGGAGAAAAAAAAAGATGAGTGAAAAAAAAAGCAGAACTGCTTTCTTTCTAACGTCTCATATATAGAGGATATATTTTGTTTGTGATCAGAATGCAGATCGNATGGTTTTGTATATCTTTTTCTAGTGAAACTTTTTTGTACTTTATACTTTTTTGATCTATTTTTTCATACNTTTTCTCTGGATTAAATAGATACAACCATGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00155	23590	25569	+

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000155s00012792.1	PF02365.10	NAM	12	133	1.30E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.023
SRR1783600	control	0.023
SRR1783602	moderate drought stress	0.467
SRR1811619	moderate drought stress	0.505

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.439
DRR006520	Root Summer glycyrrhizin high producing strain	5.638
DRR006521	Root Winter glycyrrhizin high producing strain	127.744
DRR006522	Root Winter glycyrrhizin high producing strain	125.582
DRR006523	Root Summer glycyrrhizin low producing strain	15.616
DRR006524	Root Summer glycyrrhizin low producing strain	15.076
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.683
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.551

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.282
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.049

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.748
SRR9715740	Leaf	2.608
SRR9715741	Leaf	1.149
SRR9715739	Root	0.126
SRR9715742	Root	0.138
SRR9715743	Root	0.117

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.767
SRR8749028	MeJA induced 9h	0.426
SRR8749029	MeJA induced 9h	0.271
SRR8749030	Uninduced	0.646
SRR8749031	Uninduced	0.170
SRR8749032	Uninduced	0.560

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.106
SRR8400027	Control - Root	0.032