Gene detail information of Glyur000155s00012791 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33470.1 | 8.00E-49 | histone deacetylase 14 |
| NR | XP_004503929.1 | 1.39E-103 | PREDICTED: histone deacetylase 14-like isoform X1 [Cicer arietinum] |
| COG | YP_001277501.1 | 2.00E-81 | histone deacetylase superfamily protein [Roseiflexus sp. RS-1] |
| Swissprot | tr|Q941D6|HDA14_ARATH | 3.00E-57 | Histone deacetylase 14 |
| trEMBL | tr|K7KR69|K7KR69_SOYBN | 3.00E-88 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G32600.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00155 | 13252 | 18791 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000155s00012791.1 | PF00850.14 | Hist_deacetyl | 111 | 216 | 1.60E-07 |
| Glyur000155s00012791.2 | PF00850.14 | Hist_deacetyl | 111 | 421 | 4.00E-85 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.207 |
| SRR1783600 | control | 2.197 |
| SRR1783602 | moderate drought stress | 2.321 |
| SRR1811619 | moderate drought stress | 2.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.919 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.704 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.266 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.157 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.446 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.447 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.116 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.413 |
| SRR2868004 | Drought Stress (root) | 5.747 |
| SRR2967015 | Control (root) | 3.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.128 |
| SRR9715740 | Leaf | 34.356 |
| SRR9715741 | Leaf | 11.967 |
| SRR9715739 | Root | 0.916 |
| SRR9715742 | Root | 0.979 |
| SRR9715743 | Root | 1.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.034 |
| SRR8749028 | MeJA induced 9h | 1.592 |
| SRR8749029 | MeJA induced 9h | 2.245 |
| SRR8749030 | Uninduced | 0.638 |
| SRR8749031 | Uninduced | 0.525 |
| SRR8749032 | Uninduced | 0.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.448 |
| SRR8400027 | Control - Root | 4.148 |