Gene detail

Gene detail information of Glyur000155s00012790

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G13610.1	0	ABC-2 type transporter family protein
NR	XP_003630284.1	0	ABC transporter G family member [Medicago truncatula]
COG	YP_006435207.1	4.00E-36	multidrug ABC transporter ATPase [Flexibacter litoralis DSM 6794]
Swissprot	tr\|Q9SIT6\|AB5G_ARATH	0	ABC transporter G family member 5
trEMBL	tr\|G7LE38\|G7LE38_MEDTR	0	White-brown-complex ABC transporter family protein {ECO:0000313\|EMBL:AET04760.1}

Sequence

Transcript Sequence

>Glyur000155s00012790.1
ATGAAGGTTCAAGGGTGTGAGGTTGAGGCCATTGGCATCAACTACAAGATCCACACACACAAAACGGAGCACCCTTTCAAAATCTTCAGCAAACCTCCACAACTTGATGATCATGGTCAAGAAGAAGCAGAAGAAGAGGAAGCAAAAGCTGATGAGAAATGTTGCAGTAGTGGAGTTAGGCATGTGCTCAAGAATGTNAGTTGCATAGCCAAGCCATGGGAAATCCTAGCAATTGTAGGGCCAAGTGGAGCTGGGAAATCATCACTGCTTGAGATCCTTGCNGGTAAACACAGTCCACAAAAAGGGTCTGTGTTGGTGAACCACAAGCCTGTAGACAAAGCTCAGTTCAGAAAGCTATCAGGGTATGTTACTCAAAGGGACACTTTGTTCCCCTTACTTACAGTTGAAGAAACCATGTTGTTCAGTGCAAAGCTAAGGCTAAAGCTACCTCAAGAACAACTTTGCTCCAGGGTGAAGTCACTGATTCAGGAGCTTGGACTTGACCATGTTGCTGGTGCTAGAATTGGTGATGACAGGGTCAGAGGTATATCAGGNGGAGAGAGGCGCAGGGTTTCCATTGGTGTTGAAGTGATACATGATCCAAGAGTGTTGATTCTTGATGAACCAACTTCAGGGCTTGACAGTACCTCTGCCTTGCAAATAATTGACATGCTTAAGGTCATGGCTGAGACTAGGGGAAGGACTATAATCCTCAGTATCCATCAACCTGGGTTCAGAATAGTGAAGCTGTTCAACTCATTGTTGTTGTTAGCCAATGGTTCTGTGTTACACCATGGCACTGCAGATTTACTGAGTGTGAAGCTAAGGTTAATGGGTCTAGAGCTTCCCCTTCACGTTAATGTGGTTGAGTTTGCTATTGACTCCATTGATACCATTCAGCAGCAACAAAGATGTCAGCTTTTTCAGCAGCTAGAAACTCCAAGGCAATTGCAAGGGACAATGCAACAGAAGAAAGGTGGTGGTGGTGGTGATGATGAGCAGCAACCAGTTGGTGAGGGTAAAAGTGGTAAGTTCACTCTCCAACAGCTGTTCCAACAATCCAAGGTGATTGATGAAGAGATCATCAAAGGCGGGGTTGATTTCTCTTGTGATTTTGCAAACTCTAGATTGAGAGAAACTATGATCCTCACTCATAGGTTCTCCAAAAACATCTTTCGTACCAAGGAGCTCTTTGCGTGTAGGACAATTCAGATGCTGGTNTCTGGGCTTGTTCTTGGGTCCATCTTTTGTAACCTCAAGGATGATCTAAATGGAGCAGAAGAAAGGGTTGGTCTATTTGCTTTCATATTAACTTTCTTGTTATCAAGCAGCATAGAAGCTCTACCAATTTTTCTGCAAGAGAGGGAGATTCTAATGAAGGAAACATCCTGTGGAAGCTACCGTGTGTCATCTTATGCTATTGCCAATGGCCTAGTTTACTTGCCCTTTCTTCTCATCCTAGCCATTTTGTTCACAGTACCCTTATACTGGNTTGTGGGGCTTAACAAGAATTTCACTGCTTTTTTGCACTTTTTGTTGCTGATATGGCTGATTCTTTACACTGCCAATTCAGTTGTGGTGTGTTTCAGTGCCCTGGTGCCAAATTTCATTGTTGGGAACTCGGTGATTGCCGGTGTTATTGGGTCTTTCTTCTTGTTCTCTGGATACTTCATATCAAAGCATGAGATTCCTAAATACTGGATTTTTATGCATTATATATCACTGTTTAAGTATCCCTTCGAAGGGTTCCTGATCAATGAGTTCTCCAACTCGGGGAAATGCTTGGAGTATATGTTTGGGGCATGTGTTATGAGGGGAGAGGATGTGCTTAAAGAAGAAGGTTATGGAGGAGAGAGTAGTAGATGGAAGAATGTTGGGGTCACGGTTCATCTCTTACGTTATTCTAAGATACAGATGCNCACAGAGAGGGTTCAGAAGCAGTGTTGTCATGGTCCAAAGCTAAAGCCTGTGGTGTTTAACTACAAGAAAGTAAGCACATCAGAAGTATCTACGCTGCTTTGAAGCCATTAGCACCAACACACACAGACATTTTCGTTCAAAGNTTCAGCAGATAACCTGTACATTTCACCTAAGCCAAAGAAATTCAGGCGAACTACTTATCACGAATTTCTTCCTTTTCCCAAATTTTAAGAGACAAAAGATTAATCAGATCTTAATAAAAAAATATTCTGTAAATAAATATCAATAACTTGAGCGTACACAAGCACTTCCATTATAAAGTAATAAGANTAGTTTAGAATCACTTTCCTCGTCACTAGTTTCATCATCATCATCAACTTCTGGCACATAGTCTGCTAGCTGGCTTATCTGTTCTCTGACTCTGAGAATTTCGAAAACTGAATAAATTTCCATTTTTTTTTTGAGGGTGCCTTTCATCTTTCACCATGAAAACATGCACGCTGACACACTTTCAGTTGCCTCCTCCGTTTGCGCCTCTTCAGTCTCCCATTACATGAACAATTTTCATTACAAGTGAATGAATCACTGAAATCNTATGTGACTGGACAAAGCAAGTAACTATAAGCTTTCCATGCTATACAATAAATAGTACAAGGTAATTGAGTGACAAAGAAGTAAACATAGAGTCAGGACAATCTTTTTCACTTCTTATAGAGAAAATGGTTTGAAGAAGAGCTGAGTTATAACTCAGTATCACTATCACGCAAGAGAGCCCCTCTTACTTTGGTCCTGCATGAGAAAACAAAGTGAGTATGCTATGATGCTAGAGTTGAGGTTAACAAGCTAGAAAGAACACTTGCCTGCGATATGCTGGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00155	6043	9695	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000155s00012790.1	PF00005.22	ABC_tran	63	211	9.90E-30
Glyur000155s00012790.1	PF01061.19	ABC2_membrane	380	588	5.70E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.366
SRR1783600	control	11.502
SRR1783602	moderate drought stress	9.465
SRR1811619	moderate drought stress	9.584

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.304
DRR006520	Root Summer glycyrrhizin high producing strain	8.288
DRR006521	Root Winter glycyrrhizin high producing strain	16.763
DRR006522	Root Winter glycyrrhizin high producing strain	16.152
DRR006523	Root Summer glycyrrhizin low producing strain	4.152
DRR006524	Root Summer glycyrrhizin low producing strain	4.171
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.461
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.664

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.881
SRR2868004	Drought Stress (root)	11.449
SRR2967015	Control (root)	6.690

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.172
SRR9715740	Leaf	4.370
SRR9715741	Leaf	4.012
SRR9715739	Root	2.796
SRR9715742	Root	13.335
SRR9715743	Root	12.656

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.498
SRR8749028	MeJA induced 9h	0.731
SRR8749029	MeJA induced 9h	1.339
SRR8749030	Uninduced	0.726
SRR8749031	Uninduced	2.694
SRR8749032	Uninduced	1.990

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.626
SRR8400027	Control - Root	22.083