Gene detail information of Glyur000154s00013436 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G44260.1 | 6.00E-110 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| NR | XP_003540260.1 | 6.29E-158 | PREDICTED: probable CCR4-associated factor 1 homolog 11-like [Glycine max] |
| Swissprot | tr|Q9LXM2|CAF1I_ARATH | 2.00E-137 | Probable CCR4-associated factor 1 homolog 9 |
| trEMBL | tr|I1LTY5|I1LTY5_SOYBN | 2.00E-158 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G31300.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00154 | 272416 | 273279 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000154s00013436.1 | PF04857.15 | CAF1 | 18 | 258 | 1.20E-59 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.730 |
| SRR1783600 | control | 0.752 |
| SRR1783602 | moderate drought stress | 0.528 |
| SRR1811619 | moderate drought stress | 0.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.059 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.221 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.192 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.864 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 94.995 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 94.239 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 44.270 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 44.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.656 |
| SRR2868004 | Drought Stress (root) | 50.808 |
| SRR2967015 | Control (root) | 99.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 579.318 |
| SRR9715740 | Leaf | 322.454 |
| SRR9715741 | Leaf | 538.736 |
| SRR9715739 | Root | 212.585 |
| SRR9715742 | Root | 293.786 |
| SRR9715743 | Root | 275.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 410.939 |
| SRR8749028 | MeJA induced 9h | 393.677 |
| SRR8749029 | MeJA induced 9h | 496.521 |
| SRR8749030 | Uninduced | 422.236 |
| SRR8749031 | Uninduced | 237.362 |
| SRR8749032 | Uninduced | 340.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.765 |
| SRR8400027 | Control - Root | 40.181 |