Gene detail information of Glyur000154s00013435.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52525.1 | 3.00E-11 | ovate family protein 6 |
| NR | XP_006592771.1 | 5.14E-58 | PREDICTED: uncharacterized protein LOC102661990 [Glycine max] |
| Swissprot | tr|Q3EAL1|OFP6_ARATH | 1.00E-20 | Transcription repressor OFP6 |
| trEMBL | tr|K7LVS9|K7LVS9_SOYBN | 2.00E-58 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G31310.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00154 | 268054 | 268638 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | OFP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000154s00013435.1 | PF04844.8 | Ovate | 122 | 179 | 2.90E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.312 |
| SRR1783600 | control | 0.313 |
| SRR1783602 | moderate drought stress | 0.223 |
| SRR1811619 | moderate drought stress | 0.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.339 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.270 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.189 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.159 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.629 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.746 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.828 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.722 |
| SRR2868004 | Drought Stress (root) | 1.364 |
| SRR2967015 | Control (root) | 0.826 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.962 |
| SRR9715740 | Leaf | 2.543 |
| SRR9715741 | Leaf | 4.933 |
| SRR9715739 | Root | 5.363 |
| SRR9715742 | Root | 4.713 |
| SRR9715743 | Root | 7.208 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.537 |
| SRR8749028 | MeJA induced 9h | 11.911 |
| SRR8749029 | MeJA induced 9h | 3.763 |
| SRR8749030 | Uninduced | 4.016 |
| SRR8749031 | Uninduced | 0.310 |
| SRR8749032 | Uninduced | 2.870 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.022 |
| SRR8400027 | Control - Root | 1.414 |