Gene detail information of Glyur000154s00013433 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G44220.1 | 4.00E-53 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | XP_003596851.1 | 7.95E-127 | NHL1 [Medicago truncatula] |
| Swissprot | tr|Q9SJ52|YLS9_ARATH | 1.00E-17 | Protein YLS9 |
| trEMBL | tr|G7IHG4|G7IHG4_MEDTR | 3.00E-127 | Uncharacterized protein {ECO:0000313|EMBL:AFK49557.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00154 | 250764 | 251447 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000154s00013433.1 | PF03168.8 | LEA_2 | 89 | 192 | 3.00E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.440 |
| SRR1783600 | control | 15.686 |
| SRR1783602 | moderate drought stress | 9.612 |
| SRR1811619 | moderate drought stress | 8.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 42.313 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 40.157 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.326 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.318 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.310 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.026 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 146.602 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 145.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.806 |
| SRR2868004 | Drought Stress (root) | 11.001 |
| SRR2967015 | Control (root) | 12.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 399.061 |
| SRR9715740 | Leaf | 205.737 |
| SRR9715741 | Leaf | 313.918 |
| SRR9715739 | Root | 20.619 |
| SRR9715742 | Root | 60.275 |
| SRR9715743 | Root | 46.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.922 |
| SRR8749028 | MeJA induced 9h | 0.611 |
| SRR8749029 | MeJA induced 9h | 3.699 |
| SRR8749030 | Uninduced | 0.235 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.428 |
| SRR8400027 | Control - Root | 20.440 |