Gene detail information of Glyur000154s00013429 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16470.1 | 7.00E-51 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | KHN36495.1 | 2.91E-180 | Pentatricopeptide repeat-containing protein [Glycine soja] |
| Swissprot | tr|O23491|PP315_ARATH | 2.00E-61 | Pentatricopeptide repeat-containing protein At4g16470 |
| trEMBL | tr|I1M497|I1M497_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G38970.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00154 | 230307 | 231770 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000154s00013429.1 | PF01535.15 | PPR | 76 | 101 | 0.0029 |
| Glyur000154s00013429.1 | PF13041.1 | PPR_2 | 174 | 221 | 1.30E-11 |
| Glyur000154s00013429.1 | PF01535.15 | PPR | 249 | 272 | 0.003 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.262 |
| SRR1783600 | control | 2.821 |
| SRR1783602 | moderate drought stress | 6.105 |
| SRR1811619 | moderate drought stress | 6.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.426 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.522 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.656 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.627 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.794 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.990 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.628 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.589 |
| SRR2868004 | Drought Stress (root) | 1.414 |
| SRR2967015 | Control (root) | 2.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.773 |
| SRR9715740 | Leaf | 0.970 |
| SRR9715741 | Leaf | 0.721 |
| SRR9715739 | Root | 1.531 |
| SRR9715742 | Root | 1.556 |
| SRR9715743 | Root | 1.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.818 |
| SRR8749028 | MeJA induced 9h | 3.139 |
| SRR8749029 | MeJA induced 9h | 3.107 |
| SRR8749030 | Uninduced | 1.364 |
| SRR8749031 | Uninduced | 0.756 |
| SRR8749032 | Uninduced | 1.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.986 |
| SRR8400027 | Control - Root | 1.743 |