Gene detail

Gene detail information of Glyur000154s00013412

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07870.1	4.00E-66	F-box and associated interaction domains-containing protein
NR	XP_006494892.1	8.61E-102	PREDICTED: F-box protein At3g07870-like [Citrus sinensis]
Swissprot	tr\|Q9SFC7\|FB135_ARATH	1.00E-77	F-box protein At3g07870
trEMBL	tr\|A0A067E6Q2\|A0A067E6Q2_CITSI	4.00E-102	Uncharacterized protein {ECO:0000313\|EMBL:KDO46586.1}

Sequence

Transcript Sequence

>Glyur000154s00013412.1
ATGTTCAGTATTCGAGCAAACCAGAGAAACCCAAGCCTCATCCTTCACTGCGATTCCCCAATAGTTAACAAACTTTNTTACATTAGCTCTGATAATTATAGCAACAGCAAAGTCCTGAAGATTGTTCCTCCATTCATGTCTAACATGACAGAGTACCAAGTGGTGGGTTCCTGCAATGGCTTACTATGTATATCCGATGCACTTTATTTTGACCCCGTTTATGTATGTAACATTTTCACCGGCGATTATATAGAATTGCCCAAAACTAGTCACCAATTAGAACAAGAGGTAGCACTAGGATTTGGAAACGTTCCAGCAACTAAGGAATACAAGATAGTAAGAGTGGTAAACTACAATAACAACCACAGAACACTGCGTTTGAGAGGTTGGTCTGAACGTTCTGATGTCCAGATTCTCACAATTGGCAGCACAGAATTGGCTTGGAGAAGTTTGGGGGCTATTCATTGGAAGCTTGATCTAAGACCATCAGAGGCATTCATAAATGGGGCACTACACTGGGTTACTACTAGAAGGTACCAACGTGGGCTCCACCTTCGTATTGTTGCGTTTGATTTAGCGGAGGAGAAATTTAAGGAAATTGAACGTCCCATGTGTGGCAGCCTCAACAACGTTTCCAATTTTCATCTTGTGAATTTAAGAGGTTGTCTCTCTGCTGTTGCTGTTGTTTGTCAACATGGGAGGTCATTAATTGAAATATGGGTCATGCAGGTGTATAATGTGAAGGAGTCTTGGACCAAGGACTATGTCATTAGTACTGTGAATATTTATAGTATTGTTGGTGCCGTAAACAATAGAGGAGNAGGTGCTCGTCCAAAGTCGAAGATGTGGAAGCACAACAGGACACCAAGCAGAGGANAGAATGTTGGGATTGAAGTTGTGTGTATGATGAGAAATGGGGACATTTTGTTGAATTATGAGGAAGGGGTTCTGGTTTTGTATAGCCCTCACAGTGGAAACTTTAAAGAGNTAGGATTTTCTGGTCTCCCCCGATGGTTTTCCGTGATTACACATGTTGAAACCCTCTTCTCTGTCGAGGCAACGGAAAGTGAAGCTCGGAGATACATTGTAATATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00154	136441	137718	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000154s00013412.1	PF08268.7	FBA_3	166	257	7.30E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.167
SRR1783600	control	0.167
SRR1783602	moderate drought stress	2.111
SRR1811619	moderate drought stress	2.040

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.399
DRR006520	Root Summer glycyrrhizin high producing strain	2.317
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.617
DRR006524	Root Summer glycyrrhizin low producing strain	2.897
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.084
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.519
SRR2868004	Drought Stress (root)	4.858
SRR2967015	Control (root)	7.895

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.708
SRR9715740	Leaf	0.116
SRR9715741	Leaf	0.743
SRR9715739	Root	0.135
SRR9715742	Root	2.050
SRR9715743	Root	2.395

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.154
SRR8749028	MeJA induced 9h	0.891
SRR8749029	MeJA induced 9h	0.062
SRR8749030	Uninduced	0.721
SRR8749031	Uninduced	3.037
SRR8749032	Uninduced	0.407

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.611
SRR8400027	Control - Root	0.182