Gene detail

Gene detail information of Glyur000154s00013410

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G35930.1	5.00E-76	plant U-box 23
NR	XP_003540288.1	0	PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Glycine max]
Swissprot	tr\|Q84TG3\|PUB23_ARATH	5.00E-93	E3 ubiquitin-protein ligase PUB23
trEMBL	tr\|I1LU00\|I1LU00_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G31490.1}

Sequence

Transcript Sequence

>Glyur000154s00013410.1
ATGAAGGACCCTGTGACGACGGTTACGGGCATAACATACGACAGAGACAGCATGGAGCACTGGTTGCTGAAAGCGAAGAACTGCACTTGTCCTGTTACGAAGCAACCATTGCCAAGAAGCACAGAGTTCTTAACACCAAACCACACGCTTCGCAGGCTAATCCAAGCATGGTGTTCATCGAATGAAGCCAATGGTGTCGACCAGATCCCAACCCCAAAAGCCCCTCTCAACAAGTCCCACATCGAGAATCTCGTCAAGGATCTCGAGGCTCCACGCCGTTCCCANACGGCACTGGACAAACTTCACGCTCTTGCTTCGGAGAGCGAGAGGAACAGAAGGTGCATGGCNGAAGCAGGAGTAGCCAAGGCCATAGTTCAGCACGTGGTTACAAAGAGTAATTTCAAGCAATTAGGTGGAAAAAACAAAACGGCATCGTATTCGTCCCTTGAAGAAGCTCTGAGAATTCTTCGTCTACTTTGGGGCCTANCCATAGCCACCGATGACATCATGTTTAAGCGACTAGTAAATGAAAACTTTGACTTTCTCAACTCGTTGACTTTGATATTGCAGCTTCACAATAACAAGGACCTCAAGGTGATAAACGAAGCAATGCTTATATTAAAATTGGCAATTGAAGCAAAAGACACAACCTCTCTGGGGAATCTAAAGCTTGAATTTTTCATTGAAATCGTGAAAGTGCTTAGAAACAGAGCACTGCTCTCTAATCAGGCTATAAAATCTGCATTACACGTGCTAATAGAAACGTGCCCTTTGGGTAGGAATCGGATGAAGATTGTGGAAGCAGGTGCAGTAACTGAACTCATTGAGCTTGCACTTGAAAAACCAGAAAAGAGCCTAACAGAGCTTACATTCACACTTCTTGCGAATCTGTGTTCTTGTGCTGATGGGAGAGAACAGTTTCTGAAGCATGCTGCGGGAATAGCAGTTCTCTCTAAGAGAACGCTCAGGGTTTCACCAACAACCGATGATCGAGCTCTTCATGTGCTTTCATTGATTTCTAGGTACTCTGCATCGAATGAGGTTGTTCATGAGATGTTGAGGGTCGGTGCTGTGTCGAAGCTCTGCATGGTGATGCAAGCAGATTGTGCTTCTTATTTGAAAGAAAAAGCGAGAGGTATCCTTAGGTTACACTCCAGTGCATGGAACAATTCTCCTTGTATTGAAGTGTATTTGTTAACCAGACACCAAAGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00154	133194	134408	-

Gene family

Gene family	subfamily
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function

GO:0004842 ubiquitin-protein transferase activity

GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000154s00013410.1	PF04564.10	U-box	1	62	7.00E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.060
SRR1783600	control	0.060
SRR1783602	moderate drought stress	0.496
SRR1811619	moderate drought stress	0.483

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.089
DRR006520	Root Summer glycyrrhizin high producing strain	0.089
DRR006521	Root Winter glycyrrhizin high producing strain	0.604
DRR006522	Root Winter glycyrrhizin high producing strain	0.627
DRR006523	Root Summer glycyrrhizin low producing strain	0.545
DRR006524	Root Summer glycyrrhizin low producing strain	0.545
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.251
SRR2868004	Drought Stress (root)	17.277
SRR2967015	Control (root)	7.275

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.527
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.926
SRR9715739	Root	1.053
SRR9715742	Root	0.850
SRR9715743	Root	0.768

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.913
SRR8749028	MeJA induced 9h	15.239
SRR8749029	MeJA induced 9h	5.046
SRR8749030	Uninduced	113.057
SRR8749031	Uninduced	82.788
SRR8749032	Uninduced	34.093

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.246
SRR8400027	Control - Root	2.368