Gene detail

Gene detail information of Glyur000154s00013407

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G22080.1	7.00E-80	Chaperone DnaJ-domain superfamily protein
NR	XP_003540280.1	2.28E-160	PREDICTED: dnaJ homolog subfamily C member 8-like [Glycine max]
COG	NP_616413.1	5.00E-06	molecular chaperone DnaJ [Methanosarcina acetivorans C2A]
Swissprot	tr\|Q9FH28\|DNJ49_ARATH	3.00E-07	Chaperone protein dnaJ 49
trEMBL	tr\|I1LU04\|I1LU04_SOYBN	9.00E-161	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G31530.1}

Sequence

Transcript Sequence

>Glyur000154s00013407.1
CACACTTGTACCTTGCGGCTTGCACCAAAAAAACAGTAATTTATAAGCCGTAAGGGGTCAGAACAGAATTGTCGTTTGTAAGTAGAGCTTTNTTGTCGTTTAAGCGGATTCTCAGAGGCTCAAAGCACTACCGGCGGGGCGAATCTGGTTATCTCGCTCATTCGTGAGCGAATTTGGGTTCGAAGGCAGAAACTGGATTGAATTGAAATTCAAACTCAATTCCTGAGAAGGAAGCAAAACAAAAATGGGAGAGACAACAACAATCGATGACGATTTACTTCTCAAAAGTTTCTTCGCCGAAGTCAGCGAAGTTGAGAGAGACAACGAAGTCGCTAGGATTCTCTCTTGTTTTAAGTTGAATCCATTTGAGTATCTAAACCTGCCGTTTGATTCATCCATTGGTGATGTGAAAAAGCAGTACCGCAAGATATCATTGATGGTTCACCCGGACAAATGTAAACATCCACAAGCAAAGGAGGCTTTTGGAGCACTAGCAAAAGCCCAACAATTATTACTTGATCAAAATGAAAGAGATTATCTTCTTAGCCAAGTTAATTCAGCAAAAGAGGAACTTAGAGCAAAGAGGAAGAAGCAGCTTAAGAAAGATACAGCCTCAAAAATTAAGTCTTTGGTCGAAGAGGGAAAATATGATAAACAATATGAACAGTCGGAGGAATTCCAGCATGAGCTGAAACTCAAAGTTCGTGAACTATTAACAGAACAAGAATGGAGGAGAAGAAAAATGCAAATGCGGATATCAGAGGAGGAAGGCAGATTAAAACGGGATGAAGAGGAACAAAAGGAAATGTGGAAAAGAAAGCGTGAACATGAGGAGGAATGGGAAGGAACAAGAGAAAAAAGGGTATCCAGCTGGAGAGATTTTATGAAGGGTGGAAAGAAGAATAAAAAGGGAGAAATTCGCCCCCCGAAGCTTAAGACAGAAGATCCTAACAAATCCTACGTTCAGAGGCCTGTAAAAAGAGGCTAGGGGTTCTGCCATTGTGTTAGGTCACAATCAATCCAACAAGGAATCCGAGAAAACTAATTCTTGCAGGCTTTCCTTTGTATCAGTTTGATACTTGTAAGCATATTTATCACGGCTCATAAGAGGCATCTTAATGGAATGTATACCTCCGCCAAATGAATACCCCATTTTGGGATGTTTCCCCCTAATGATACATAGGAATTATTAAGCTGTATTGCCTTATTAATGCCTTTTGAGAAATTATGCACCATTTCTGCTGGTTACCCACCAAAAAACCCATATATACTGGTCATCCGCAGCGACGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00154	95824	100050	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000154s00013407.1	PF00226.26	DnaJ	39	96	1.00E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	61.780
SRR1783600	control	62.034
SRR1783602	moderate drought stress	84.644
SRR1811619	moderate drought stress	84.306

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	69.067
DRR006520	Root Summer glycyrrhizin high producing strain	68.236
DRR006521	Root Winter glycyrrhizin high producing strain	70.269
DRR006522	Root Winter glycyrrhizin high producing strain	68.874
DRR006523	Root Summer glycyrrhizin low producing strain	90.450
DRR006524	Root Summer glycyrrhizin low producing strain	90.741
DRR006525	Leaf Summer glycyrrhizin high producing strain	36.609
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.540

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	66.309
SRR2868004	Drought Stress (root)	70.366
SRR2967015	Control (root)	70.859

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	55.217
SRR9715740	Leaf	60.831
SRR9715741	Leaf	62.536
SRR9715739	Root	3.509
SRR9715742	Root	18.540
SRR9715743	Root	15.856

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	87.922
SRR8749028	MeJA induced 9h	153.643
SRR8749029	MeJA induced 9h	105.127
SRR8749030	Uninduced	178.750
SRR8749031	Uninduced	192.157
SRR8749032	Uninduced	111.299

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	67.790
SRR8400027	Control - Root	59.747