Gene detail information of Glyur000154s00013403 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G44160.1 | 9.00E-174 | Outer membrane OMP85 family protein |
| NR | XP_007150011.1 | 0 | hypothetical protein PHAVU_005G118400g [Phaseolus vulgaris] |
| COG | YP_007100680.1 | 5.00E-39 | surface antigen (D15) [Chroococcidiopsis thermalis PCC 7203] |
| Swissprot | tr|Q9C5J8|OEP80_ARATH | 1.00E-71 | Outer envelope protein 80, chloroplastic |
| trEMBL | tr|V7BY92|V7BY92_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW22005.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00154 | 68960 | 73897 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000154s00013403.1 | PF01103.18 | Bac_surface_Ag | 55 | 358 | 1.10E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.187 |
| SRR1783600 | control | 3.486 |
| SRR1783602 | moderate drought stress | 2.747 |
| SRR1811619 | moderate drought stress | 2.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.292 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.374 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.712 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.926 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.760 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.700 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.704 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.912 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.409 |
| SRR2868004 | Drought Stress (root) | 8.994 |
| SRR2967015 | Control (root) | 7.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.106 |
| SRR9715740 | Leaf | 18.659 |
| SRR9715741 | Leaf | 13.002 |
| SRR9715739 | Root | 2.898 |
| SRR9715742 | Root | 3.534 |
| SRR9715743 | Root | 4.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.398 |
| SRR8749028 | MeJA induced 9h | 6.236 |
| SRR8749029 | MeJA induced 9h | 3.332 |
| SRR8749030 | Uninduced | 3.342 |
| SRR8749031 | Uninduced | 2.153 |
| SRR8749032 | Uninduced | 1.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.786 |
| SRR8400027 | Control - Root | 9.070 |