Gene detail

Gene detail information of Glyur000154s00013400

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G22070.1	2.00E-121	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
NR	XP_007150010.1	0	hypothetical protein PHAVU_005G118300g [Phaseolus vulgaris]
trEMBL	tr\|V7BVL8\|V7BVL8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW22004.1}

Sequence

Transcript Sequence

>Glyur000154s00013400.1
ATGATAATAGTTCCTCAATTGAGGATAGCCCCATACTCAATGTTCTCAACCCCATTCGTCCTCACCTTCTCTCTCCTCCTCTCCCTCCCTATCCTCTTCTTCCTCGCCCCTCGCATCCTCCCCCCCAGCCCCCACTCCCTCCCCATTTCCCCCTCCGATGAACTCGATGACATCAACCTCTTCAACCGCGCCATCGCCCACTCCACCACCACCTCTTCTTCCAACAACAATAACCCTTCAAAATTCTTCCACCTTTCCTCCAAAAACCCAAACCTCAAAATCGCGTTCCTCTTCCTCACAAACTCCGATCTCCACTTCGCCCCTCTATGGGACCTCTTCTTCCGCAACAACCCAACCAACCTCTTCAACCTCTACGTACACGCCGACCCAACCGTCAACATCACGCGCCCCCAATCCCCTAACTTCAAGTTCATCCCTTCCAAGCGCACTTTCCGCGCCTCCCCCACGCTCATCTCCGCCACGCGCCGCCTACTCGCGACCGCACTCCTCGACGACCCCGCCAACGCTTACTTCGTCGTCCTCTCACAGTACTGCATCCCCCTCCACTCCTTCTCCTACGTCTACCGTTCCCTTTTCCTCTCCCCAACCTTCGATTTGACCGATCCAGAATCTTCCCAATTCGGTGTTCGCCTCAAATATAAGAGCTTCGTTGAGATCCTCTCCAATGCGCCTAGGTTATGGAAGCGCTATGCCGCTAGGGGTCGCTATTCTATGATGCCTGAGGTTCCTTTTGATAGGTTTCGGGTCGGATCTCAGTTTTTCGCACTGACCCGAAAGCACGCGTTGGTTGTTGTGAAGGACAGGACACTGTGGAGGAAATTCAAGGTGCCGTGTTACCGTGAGGACGAGTGTTACCCTGAGGAGCATTATTTTCCGACGCTTTTGTCAATGGCGGATCCTGATGGATGCACCAGGTACACCCTCACTAGGGTTAATTGGACCGGCACCGTTAACGGCCACCCTTATACCTATCGGCCCGATGAGGTCTCGCCGGAGCTCATTCGCCGGTTGAGGGTTTCCAATCACTCCGAGTCTTATTTGTTTGCGAGGAAATTCACCCCTGATTGCTTGCAACCCTTGATGCGCATGGCCAAATCCGTCATTTTCAAGGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00154	59985	61121	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0008375 acetylglucosaminyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000154s00013400.1	PF02485.16	Branch	94	201	3.70E-27
Glyur000154s00013400.1	PF02485.16	Branch	220	345	1.40E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	59.618
SRR1783600	control	60.197
SRR1783602	moderate drought stress	33.009
SRR1811619	moderate drought stress	36.790

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.907
DRR006520	Root Summer glycyrrhizin high producing strain	24.617
DRR006521	Root Winter glycyrrhizin high producing strain	9.048
DRR006522	Root Winter glycyrrhizin high producing strain	9.259
DRR006523	Root Summer glycyrrhizin low producing strain	29.823
DRR006524	Root Summer glycyrrhizin low producing strain	30.558
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.758
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.922

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.925
SRR2868004	Drought Stress (root)	16.400
SRR2967015	Control (root)	20.394

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.263
SRR9715740	Leaf	3.961
SRR9715741	Leaf	3.995
SRR9715739	Root	17.961
SRR9715742	Root	20.221
SRR9715743	Root	18.684

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.802
SRR8749028	MeJA induced 9h	19.407
SRR8749029	MeJA induced 9h	13.591
SRR8749030	Uninduced	7.418
SRR8749031	Uninduced	3.162
SRR8749032	Uninduced	5.191

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.499
SRR8400027	Control - Root	30.148