Gene detail information of Glyur000154s00013398 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22190.2 | 4.00E-76 | IQ-domain 5 |
| NR | XP_006587474.1 | 0 | PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9SF32|IQD1_ARATH | 7.00E-43 | Protein IQ-DOMAIN 1 |
| trEMBL | tr|K7LEJ7|K7LEJ7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G30780.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00154 | 51941 | 58684 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000154s00013398.1 | PF00612.22 | IQ | 94 | 113 | 3.40E-05 |
| Glyur000154s00013398.2 | PF00612.22 | IQ | 94 | 113 | 3.40E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.481 |
| SRR1783600 | control | 25.002 |
| SRR1783602 | moderate drought stress | 18.488 |
| SRR1811619 | moderate drought stress | 18.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 33.531 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 35.096 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.113 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.341 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 67.031 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 65.969 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.943 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 40.674 |
| SRR2868004 | Drought Stress (root) | 39.450 |
| SRR2967015 | Control (root) | 41.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.334 |
| SRR9715740 | Leaf | 20.985 |
| SRR9715741 | Leaf | 18.349 |
| SRR9715739 | Root | 3.210 |
| SRR9715742 | Root | 15.397 |
| SRR9715743 | Root | 13.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.263 |
| SRR8749028 | MeJA induced 9h | 24.379 |
| SRR8749029 | MeJA induced 9h | 12.659 |
| SRR8749030 | Uninduced | 20.199 |
| SRR8749031 | Uninduced | 7.360 |
| SRR8749032 | Uninduced | 5.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 31.159 |
| SRR8400027 | Control - Root | 29.708 |