Gene detail information of Glyur000153s00013711 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G65690.1 | 5.00E-53 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | NP_001239877.1 | 4.56E-104 | uncharacterized protein LOC100778798 [Glycine max] |
| Swissprot | tr|Q9SJ52|YLS9_ARATH | 2.00E-19 | Protein YLS9 |
| trEMBL | tr|C6TEB3|C6TEB3_SOYBN | 2.00E-104 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G40580.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00153 | 289798 | 290573 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000153s00013711.1 | PF03168.8 | LEA_2 | 114 | 217 | 5.90E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.697 |
| SRR1783600 | control | 0.616 |
| SRR1783602 | moderate drought stress | 0.790 |
| SRR1811619 | moderate drought stress | 0.675 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.207 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.122 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.075 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.149 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.638 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.263 |
| SRR2868004 | Drought Stress (root) | 14.250 |
| SRR2967015 | Control (root) | 5.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.209 |
| SRR9715740 | Leaf | 1.576 |
| SRR9715741 | Leaf | 11.985 |
| SRR9715739 | Root | 2.143 |
| SRR9715742 | Root | 3.221 |
| SRR9715743 | Root | 3.386 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 33.781 |
| SRR8749028 | MeJA induced 9h | 92.064 |
| SRR8749029 | MeJA induced 9h | 179.309 |
| SRR8749030 | Uninduced | 160.717 |
| SRR8749031 | Uninduced | 780.724 |
| SRR8749032 | Uninduced | 417.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.870 |
| SRR8400027 | Control - Root | 7.136 |