Gene detail

Gene detail information of Glyur000153s00013707

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10860.1	3.00E-94	Cystathionine beta-synthase (CBS) family protein
NR	XP_003616096.1	1.46E-139	Cbs domain protein [Medicago truncatula]
COG	YP_007589007.1	6.00E-33	putative signal-transduction protein containing cAMP-binding and CBS domains [Rhodanobacter denitrificans]
Swissprot	tr\|Q9LEV3\|CBSX3_ARATH	4.00E-119	CBS domain-containing protein CBSX3, mitochondrial (Precursor)
trEMBL	tr\|G7K5X3\|G7K5X3_MEDTR	1.00E-139	Cystathionine beta-synthase (CBS) family protein {ECO:0000313\|EMBL:AES99055.1}

Sequence

Transcript Sequence

>Glyur000153s00013707.1
CACCCCACACGCCGCTCTCTCTCTCACAGTCACATTACTCTCTCTTTGGTACTCTCTCTTTGGTACTCTCTCTTTCTCTCTTCAATTTCCCAATCTACAGTTCTTGCTCTTGCATGCACCATCCATCTTCTGATCCATTCTCTTTTTCCTATGATCAGTGGCAATTGAATTTGCATGGTTTTATAAATGAAAGATCTGAATAGTTTTGAGGCGTGACCCAGAAAAATAATCTGAATACAGAATCAGACAGTTAAAATGCAAGGAGGACTGCGATCGTTTTTATCAAATGGCAGTGTCATCAAAAATGCTGTTTTGCAACGAGTCCGCATGGTGAACCCCCTGTTGCAGCCAGCTGCCTTTTCACGGTTTGAGTCTGTTACACCTGCTCGTATTGAGGAGCATGGTTTTGAGAGCACCACAATTGCAGACATCTTGCAAGGAAAAGGAAAAGGCGCAGATGGCTCCTGGCTTTGGTGCACCACAGATGACACTGTTTATGATGCTGTGAAATCAATGACCCAGAACAATGTTGGAGCTTTGGTGGTTGTGAAACGCGGTGAGGAGAAGACAATTGCAGGAATTATAACAGAAAGAGATTACCTGAGGAAGATCATNGTCCAGGGAAGATCATCCAAGTCCACCAAGGTTGGAGATATTATGACTGAAGAGAACAAACTTATCACGGTCACCCCNGATACCAGAGTTCTGCGGGCAATGCAGCTGATGACCGATAACAGAATCAGACACATCCCTGTCATTAATGACAGTGAGATGATCGGCATGGTGTCCATTGGGGACGTGGTTCGTGCTGTCGTGAGCGAGCATCGACAAGAGCTTGACCGCTTGAATGCTTATATACAAGGGGGTTATTAGTCTATTAGATGATGCTGAAAATCCCTTTAAAGGTACTCAAGCTGACTTGGATCATGTAATAAGCTTGAGTGCTTGTAAATATGTTTTGGCCAGAGAGCCATCTTGTTTGCTTTCTCTGTAATTTCGGATTTCAGTTTCATGGACATTAACCCATGGAGTAGCATGATGTTAATAATAACTACCGGATGCAGTTGTTTGAATGCCTGTTCTGTTAGTGTTCTTTACTTCTGTTGCTTCACTAGTACTGCCACATGGANCTTTAACTGTTTGAAAATGGTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00153	273019	276813	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000153s00013707.1	PF00571.23	CBS	74	119	2.50E-09
Glyur000153s00013707.1	PF00571.23	CBS	131	187	4.00E-13
Glyur000153s00013707.2	PF00571.23	CBS	88	133	2.80E-09
Glyur000153s00013707.2	PF00571.23	CBS	145	201	4.50E-13
Glyur000153s00013707.3	PF00571.23	CBS	80	125	2.60E-09
Glyur000153s00013707.3	PF00571.23	CBS	137	193	4.20E-13
Glyur000153s00013707.4	PF00571.23	CBS	74	119	2.50E-09
Glyur000153s00013707.4	PF00571.23	CBS	131	187	4.00E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	469.023
SRR1783600	control	471.335
SRR1783602	moderate drought stress	403.410
SRR1811619	moderate drought stress	402.655

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	555.009
DRR006520	Root Summer glycyrrhizin high producing strain	548.106
DRR006521	Root Winter glycyrrhizin high producing strain	140.495
DRR006522	Root Winter glycyrrhizin high producing strain	137.287
DRR006523	Root Summer glycyrrhizin low producing strain	527.220
DRR006524	Root Summer glycyrrhizin low producing strain	525.901
DRR006525	Leaf Summer glycyrrhizin high producing strain	180.879
DRR006526	Leaf Summer glycyrrhizin high producing strain	178.996

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	230.001
SRR2868004	Drought Stress (root)	409.810
SRR2967015	Control (root)	371.842

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	286.476
SRR9715740	Leaf	278.962
SRR9715741	Leaf	479.917
SRR9715739	Root	493.001
SRR9715742	Root	262.663
SRR9715743	Root	310.363

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	152.570
SRR8749028	MeJA induced 9h	143.355
SRR8749029	MeJA induced 9h	147.067
SRR8749030	Uninduced	103.798
SRR8749031	Uninduced	62.040
SRR8749032	Uninduced	136.329

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	295.274
SRR8400027	Control - Root	330.962