Gene detail information of Glyur000153s00013699.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23880.1 | 2.00E-14 | F-box and associated interaction domains-containing protein |
| NR | KEH25197.1 | 3.92E-49 | F-box protein interaction domain protein [Medicago truncatula] |
| Swissprot | tr|Q9LIR8|FBK67_ARATH | 6.00E-16 | F-box/kelch-repeat protein At3g23880 |
| trEMBL | tr|A0A072U686|A0A072U686_MEDTR | 1.00E-49 | F-box protein interaction domain protein {ECO:0000313|EMBL:KEH25197.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00153 | 200838 | 201521 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000153s00013699.1 | PF00646.28 | F-box | 14 | 51 | 4.10E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.522 |
| SRR1783600 | control | 1.092 |
| SRR1783602 | moderate drought stress | 2.118 |
| SRR1811619 | moderate drought stress | 2.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.449 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.786 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.323 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.463 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.767 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.254 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.282 |
| SRR2868004 | Drought Stress (root) | 0.507 |
| SRR2967015 | Control (root) | 0.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.335 |
| SRR9715740 | Leaf | 0.319 |
| SRR9715741 | Leaf | 0.094 |
| SRR9715739 | Root | 2.690 |
| SRR9715742 | Root | 0.662 |
| SRR9715743 | Root | 0.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.418 |
| SRR8749028 | MeJA induced 9h | 0.444 |
| SRR8749029 | MeJA induced 9h | 0.173 |
| SRR8749030 | Uninduced | 0.096 |
| SRR8749031 | Uninduced | 0.003 |
| SRR8749032 | Uninduced | 0.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.360 |
| SRR8400027 | Control - Root | 1.632 |