Gene detail

Gene detail information of Glyur000153s00013696

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38610.2	7.00E-92	RNA-binding KH domain-containing protein
NR	XP_003519299.1	4.10E-171	PREDICTED: KH domain-containing protein At3g08620 isoform X1 [Glycine max]
Swissprot	tr\|Q9ZVI3\|QKIL3_ARATH	5.00E-114	KH domain-containing protein At2g38610
trEMBL	tr\|I1JHN7\|I1JHN7_SOYBN	2.00E-171	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G40440.7}

Sequence

Transcript Sequence

>Glyur000153s00013696.1
AGAGACATCAGTTTTTGTTGAGGGAAAAACATACATACAATGATACAACACTGCATATGCAACAAAGTCAACAAAACAACAATTAAAACAACCCCCTTGAGAGAGATATAAGATAGATAGATAGANGACACCCTTTAAGGCTTGCTTTTACTACTGAGCTACACAAGCTTGGTGGCCCTCCATCATCTATATTTTCTAGTTCTGTGCCTTTTCTTTTCTTCCAACTACCACATCTCTTTTTTTCCCCCATCAAACACAGTTGAAAGGTGATTCTGTGTTTTCTAACAGGAACTCAAAGAACCCTTTTCTTCTCTCTTATTACTCCCTTTGAAATTTCTCCAGTCTTTCAGGGGTAACCCCTTATTCTTGTAGAATTGATGTCTGGTTTGTACAATCAGATTTCCTCACCTTCAACAGCAAGGGCCAATTCACCAAATATAAACATGAGAAGCAATCTTGATGTTGATAGCCAGTACTTAACGGAGCTGCTAGAAGAACACCAGAAGCTTGGACCTTTCATGCAAGTCTTACCCTTATGTACCAGACTCTTAAATCAAGAGATTTTAAGGGTTTCTGGGAAGAATGGATTGATGCAAAACAAGGGGTTCAGTGACTATGACAGAGTGCAGTTTGGAAGCCCCAAGCCTAGTCTTATGCCTTCTTTAGACATAACGCCAAATTTTACTGGCTGGAACAGCCTGTCACATGAAAGGTTAGGTGGAGTACAGGGACTAAATGTGGATTGGCAAACATCACCAGTTGTCTCAAACTCTCACATTGTGAAGAGGATGTTGCGCTTGGATATTCCTAGTGAGAACTATCCAAATTTCAATTTTGTTGGGAGGCTTCTTGGCCCTAGGGGTAATTCACTGAAGCGAGTGGAGGCTACCACAGGTTGCCGTGAAGAGTTGTTAAGGGGAAGGCCAGGCTATGAGCACCTGAATGAACCACTGCACGTGTTGATTGAGGCTGAACTACCAGTCAATGTTGTTGATATAAGGCTGAGGCAAGCACAGGAAATCATAGAAGAGCTACTCAAACCTGTGGATGANTCACAGGACATGTACAAGAGGCAACAACTAAGAGAACTTGCCATGATCAATTCCAATTTCAGAGAAGAGAGCCCTCAACTGAGTGGTAGTGTCTCTCCATTCACCTCTAGTGANATAAAACGGGCCAAAACTGACCAATAGACAGTGTTTCTACTACATTTGAGCATTGGTGCATTTGATGTTATACTTCCTGTATGTAAATGCTTGTGTAGCTGCAATGAGAAGAAGACCTTGCTGGTATGGAAGAACAAANTGATAGGGAGAAGAGGGAGGGGGTAGATACACATATATTCATTGCCATAGTCAACTGCATTTAGCAGACTTGCAAAATTAGCTGAATGATTACTATTATTTTATTATTATTATTTTTGTCTAGACCATCCGTTTCAGGATCCCGACTAATGCAAAACTCTCTCAAATCAAGATCCTTGCGTCATATGTATGACAATTGATTGGTATATGTTTAATGTGTATAAATGAGACAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00153	180471	184539	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	49.227
SRR1783600	control	49.000
SRR1783602	moderate drought stress	50.079
SRR1811619	moderate drought stress	49.517

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	52.801
DRR006520	Root Summer glycyrrhizin high producing strain	51.878
DRR006521	Root Winter glycyrrhizin high producing strain	26.310
DRR006522	Root Winter glycyrrhizin high producing strain	25.667
DRR006523	Root Summer glycyrrhizin low producing strain	44.972
DRR006524	Root Summer glycyrrhizin low producing strain	44.644
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.153
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.365

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.547
SRR2868004	Drought Stress (root)	52.216
SRR2967015	Control (root)	59.565

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.074
SRR9715740	Leaf	31.709
SRR9715741	Leaf	34.984
SRR9715739	Root	12.033
SRR9715742	Root	21.285
SRR9715743	Root	21.065

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.192
SRR8749028	MeJA induced 9h	11.122
SRR8749029	MeJA induced 9h	8.464
SRR8749030	Uninduced	8.529
SRR8749031	Uninduced	8.344
SRR8749032	Uninduced	5.120

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.198
SRR8400027	Control - Root	53.079