Gene detail

Gene detail information of Glyur000153s00013692

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58280.1	2.00E-28	AP2/B3-like transcriptional factor family protein
NR	KHN41001.1	1.08E-157	Putative B3 domain-containing protein [Glycine soja]
Swissprot	tr\|Q9FHB2\|Y5828_ARATH	6.00E-50	Putative B3 domain-containing protein At5g58280
trEMBL	tr\|K7KAC9\|K7KAC9_SOYBN	9.00E-158	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G40400.2}

Sequence

Transcript Sequence

>Glyur000153s00013692.1
ATGGCAAAGGGTTGCACCAACAACAAGTACGAAGAGGCTAGGAAACAAAGACTTGAAGAAAACAAGAAGAGGTTTGAGCATCGTCTTCCTAAATTGAAATNAGAGACTAATGGTGTAGTGGAACCTAGGCGCTCTTCTCGTGTGCGAAACCCAGTTACTTACCGTGAAGACGTTGGCATAGACCTTCCAAATCTGCAGCTGCGGAAGAGGTCAAGGTCAATTCCATCATCATGGGGAAGGTGGTTAGTTATGGGACTCAGTTATGCTGCAAGACCACTAGATGAACTCAAAGAAGCTACACAAGAAGAAAGAGTTCGTGCTCTGGAGGCTGCAGAAGAACTCCAAATCAGTTTGCAGTCTTCAAATCCATCATTTATCAAGTCAATGGGTCTTCCTAGTAAATTTTGTGAGGAACATCTTCCAAAAACTGTGTATAACATGACTTTAGAGGATGAAAATGGCTCAGAATATGAGGCTGTTTACATTGGCAATAGAGCTGGGCTTAGTGGTGGCTGGAGAGCATTTGCATTGGATCANAAGTTAGATGATGGTGATGCACTTATTTTTGAATTGATTGAAGCAGCGAGATTTAAGATTTATATTGTTAGAGTTAGAGCATTTCCAGATTTAGTTGAAGAGGATGGAAAGGATACTTCGGTNGAAGAAGGAAATATGCACGCAACCAAAGCAACAAAAGCATCAAAGGCTGCCAGTAATGGTGAATCAGAATCAAACAAGACGAAAAAGCCAAAACGGGCCATTGTACATGAAACTAAGGAATCAGATAGTTCACAGGAAAATCTGCCAGAAAGTAGTGTTGACAAAGAAGTCAAACCACAGGCNGTAACTCCGATTAAGAAAGCTAAACCTTCTCAGAAAAAAATGCAAAAGAAATCTAAACTACCTACTACTCCGGAGTCAAAAGGGGAAGCACAAATTGAAACTGAGAAACCAAAGGCAGCTAGAAAGTTGTCAAACAACAAAACAAGGAAGTCAAAAGAAGGTATTGTACGCGAAATTGGTGACTCAGGCAATACTGAGCAGCTTCTTTTAGAAGATAATGTTGTTAAAGCAAGTGAGACTACGCCGGGCAAGAAGAATGAATTTGTTCAGGATGCTGATAGTGAGTTAAAGAAAGTTGAGCCAGCTGAAGAAGCAANCAAATCTGTTTCACAGAAACTTAGAAAAAAACCAGCTGTAAAGTATTTCAGAAAGAAAGCNTAGTCTTGGAGCTAATGACTGGTAAAATAGTTGTCGCGAAACGCAGAAATATATTNAAGTTGTATGAAAAATTTTAGGAAAAAGACAGTATTTTCTGTTTATCTGTTAGTGAGTGGACTAGATGTGTTATGTGTTAGTTATAATACATAAGAAGTGACATTGCTCTATGATATTTATCAGTGGGTATTGTGAGTGTTGGCTTAAGAGAAAGTTCAGAAACATGAAACTTTTATGCAATGTTAGCTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00153	152844	158284	-

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000153s00013692.1	PF02362.16	B3	127	202	9.40E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.866
SRR1783600	control	7.939
SRR1783602	moderate drought stress	7.613
SRR1811619	moderate drought stress	7.277

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.539
DRR006520	Root Summer glycyrrhizin high producing strain	5.245
DRR006521	Root Winter glycyrrhizin high producing strain	0.758
DRR006522	Root Winter glycyrrhizin high producing strain	0.710
DRR006523	Root Summer glycyrrhizin low producing strain	1.419
DRR006524	Root Summer glycyrrhizin low producing strain	1.502
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.108
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.065

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.101
SRR2868004	Drought Stress (root)	4.205
SRR2967015	Control (root)	5.845

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.613
SRR9715740	Leaf	4.198
SRR9715741	Leaf	6.120
SRR9715739	Root	0.735
SRR9715742	Root	4.548
SRR9715743	Root	3.229

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.929
SRR8749028	MeJA induced 9h	2.008
SRR8749029	MeJA induced 9h	4.136
SRR8749030	Uninduced	0.330
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.512

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.236
SRR8400027	Control - Root	16.515