Gene detail

Gene detail information of Glyur000153s00013689

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G30520.1	Phototropic-responsive NPH3 family protein
NR	XP_003616056.1	Root phototropism protein [Medicago truncatula]
Swissprot	tr\|Q682S0\|RPT2_ARATH	Root phototropism protein 2
trEMBL	tr\|G7K0V9\|G7K0V9_MEDTR	Root phototropism-like protein {ECO:0000313\|EMBL:AES99014.1}

Sequence

Transcript Sequence

>Glyur000153s00013689.1
CTCCAATGCTAGAACCGATTTTGGGTTTTTATCTCTCTTTTAGTGTGTCCAAATATGTCACATAAGATTTAAGAACTTTCATTACTTTTCACTCCAATAGAAGAACCNAATATTAGTTCTTAACATACCTTTAGTGGGTCCTACAATTACTTTGCAAGAAAATTATTTTTTAATGTGTAAGAACTGATTCTTATATAAGAACCGGGACCGTTCTTACATGTGACAGTCACATCAGCGAACTCCAATGCTGTAAAAAAGAAGAACCGATTTTTATGTATAAGAACACATATAAGAACCACCATCGGAGATGTAATTTGATAGCAGCAATTGAAACATGTCAACTTGGACCACAGTGACAAACTCTCACATCAACTCATGAAGATAAAATCATAAATCCATAATAATGAAGTGAATTTACCACCGGGTTCAGAATCTCCTTATAACAAACTGACCATTACCATGTAAGTTCTTCTCAAACCCCAAAACNAATTCAGACCAAAAGAAAAACCAACTATATCAACTCATGGCAGCTCCCAACCCCACCAGACTCTCCCTTGCTATGGAGAGAACAGGGCAATGGATTTTCAATCAAGAAATCCCAAGCGATGTTATAGTTACAGTTGGAGATGCCAGTTATTCTCTCCACAAGTTCATGCTGGTGGCGAAGAGCAACTACATCAGAAAGCTGATAATAGAATCAGAGGAGAGCGATCTTACCAGAATAGACCTCTCAGACATACCTGGAGGACAAGAAGCTTTTGAGAAAGCAGCGAAATTCTGTTACGGCGTCAACTTCGAGATAACCGTTCACAACGTAGCCGCGCTGCACTGCGCCGCCGTGTTCCTCCAGATGACCGACGAGTACTGCGACGGCAACCTCGCCGGAAGAACGGAAGGCTTCCTCTCTGAGGTCGCTCTGTCAAGCCTTTCCGGCGCCGTCGTCGTTTTGAAGTCCTGCTTTCAGCTTCTCCCCGTCGCCGAAGACCTCGACATCGTCGACCGCTGCGTCGACGCCGTCGGATCCAAGGCGTGCAATGAGGCCAACTTCCCCAGCCGCTCGCCGCCGAACTGGTGGANGGAAGAGCTCGCTCTTCTCGACGTGGATTCGTTCGGGAAAGTGATCGCCGCCATGAAGCAGCGCNGCGCGAAATACCTGACAATAGCCGGAGCTTTGATCACGTACACTGAAAGCGCGCTCCGGGAGCTAGTCCGGGACCAGACCGGCGGAGGAGGAGGAGGNAGAATCCGGTCTCCGGAATCCGGCGATTCCGATTCGGAAACAAAAATGGAACAACGCGAGCTTCTGCAGTCCATCGTCCCTCTCTTCCCTTCCGAGAAAGCCGCTTTTCCGATCAACTTCCTCTGCTGCCTTCTCCGGTGCGCGATCTACCTCCGCGCCTCGAGCGCGTGCAAGCGCGAGCTCGAGAAGCGAATCTCCGAGATCCTGGAGCACGTGACGGTGGACGACCTCCTGGTGCTCTCGTTCACCTACGACGGCGAGAGGCTCCTGGATCTGGACAGCGTGAGGAGAATCATCTCCGGCTTCGTGGAGAAGGAGAAGAGCACGTCGGTGTTCAACGCCGGCGCCACCTTCGGNGACAACTGCTCCGCCGCGTTGCAGCGCGTGGCCAAAACCGTCGACGCGTACCTCGCCGAGATCGCCGCGTACGCCGAACTCACCATTTCCAAGTTCAACGGCATCGCTATTCTCATCCCAAAAGGCGCGCGAAAACTCGACGATGATCTATACCGCGCCGTCGATATCTACCTCAAGGTGCACCCGAACCTGGATGAGTTAGAGAAGGAGAAGGCGTGCAGCGTGATGGACCCGCTGAAAATGTCTTACGAGGCGCGTGTGCACGCGTCGCAGAACAAGTGTTTACCGGTGCANATCGTGCTTCACGCGCTGTACTACGATCAACTAAAGCTTAGGAGCGGATCGGAGGAGGCGCGTGACGCGCCGGCGGAGAGGAATCAGCTGCAGAAGGACGTNTCGTTGGTGAGAGAGAACGAGGAGTTGCGGACGGAGCTGATGAGGATGAAGATGTACATTTCGGATATGCAGAAGAACGGTAACGCCGCAACGACGTCGTCTGGGAAGGAAACAGCAGCAACAGCGTCTGTCTCCGCGCCCAAAAAGCCAACGTTCTTCTCGTCTGTGTCCAAGAAACTGGGGAAGTTGAACCCGTTCAAGCATGGGTCCAAGGACACGTCACATATTGATGATGGGCCTGTGGACTTCACCAAGCCCNGAAGGAGAAGACATTCGGAGGAATCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00153	117084	120116	-

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009638 phototropism

molecular_function

GO:0004871 signal transducer activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000153s00013689.1	PF00651.26	BTB	21	111	3.10E-09
Glyur000153s00013689.1	PF03000.9	NPH3	182	443	3.80E-75

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.171
SRR1783600	control	3.205
SRR1783602	moderate drought stress	4.347
SRR1811619	moderate drought stress	4.205

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.901
DRR006520	Root Summer glycyrrhizin high producing strain	1.974
DRR006521	Root Winter glycyrrhizin high producing strain	0.632
DRR006522	Root Winter glycyrrhizin high producing strain	0.687
DRR006523	Root Summer glycyrrhizin low producing strain	1.849
DRR006524	Root Summer glycyrrhizin low producing strain	1.958
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.629
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.613

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.528
SRR2868004	Drought Stress (root)	27.467
SRR2967015	Control (root)	16.584

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.541
SRR9715740	Leaf	21.366
SRR9715741	Leaf	23.308
SRR9715739	Root	19.500
SRR9715742	Root	13.585
SRR9715743	Root	15.244

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.582
SRR8749028	MeJA induced 9h	2.799
SRR8749029	MeJA induced 9h	0.778
SRR8749030	Uninduced	0.719
SRR8749031	Uninduced	0.280
SRR8749032	Uninduced	0.602

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.731
SRR8400027	Control - Root	22.299