Gene detail

Gene detail information of Glyur000153s00013683

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20920.3	1.00E-109	eukaryotic translation initiation factor 2 beta subunit
NR	XP_003544938.1	2.49E-175	PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like isoform X1 [Glycine max]
COG	NP_614250.1	2.00E-27	translation initiation factor IF-2 subunit beta [Methanopyrus kandleri AV19]
Swissprot	tr\|P55871\|IF2B_MALDO	2.00E-151	Eukaryotic translation initiation factor 2 subunit beta
trEMBL	tr\|I1MBL6\|I1MBL6_SOYBN	9.00E-176	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G38600.1}

Sequence

Transcript Sequence

>Glyur000153s00013683.1
TGGCTCCACAACACACACAGACACAGAGGACACCCTCTTCATCGTCTCAAGGGATTCGATTCTCTGTGCTCTTACTTGTAGGATTTCCTCTGCGCTTTTTTCAGCAATCATGGCTGATGAAACACAAAATGATATGAAGGAGGAGGTTGCAGAAATTGTGCCATTTGATCCTACTAAGAAGAAAAAGAAGAAGAAAATTACAATTGTAGATCCTGCTGATGAATCGGTTGACAAATTGGCTGAGAAGACAGAAAGCCTGTCAGTTTCTGATGGGATTGAGACTGCATTTTCTGGTTTGAAAAAGAAGAAGAAGAAGCCTGTTGAAATGAGTAACCTAAATGATGAGAGTGGAGATGCAATTGAAGATTTGGATGATCATGCTGAAGATGATGAAGGAGAAGCAGTTGCTTTGCAGACTCGTTATCCTTGGGAAGGGAGTGACCGTGATTATGAATATGAGGAGCTTCTTGGAAGGGTGTTTAACATTCTGCGTGAAAATAATCCAGAGCTTGCTGGAGATCGGCGAAGGACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTTATGGATCTTTGCAAAACGATGCATCGGCAGCCAGACCATGTCATGGCTTTCTTGCTTGCTGAACTGGGTACAAGTGGCTCCCTAGACGGACAGCAGAGATTGGTTGTAAAGGGAAGATTTGCACCAAAGAACTTTGAAGGAATTTTGCGGCGTTATGTCAATGAATACGTCATTTGTCTTGGATGCAAGAGTCCAGACACAATACTTTCAAAGGAGAACCGTCTGTTCTTTCTACGGTGTGAGAAGTGTGGATCAGGAAGATCAGTTGCTCCAATCAAAGCTGGTTTTGTTGCTCGTGTTGGCCGTAGGAATGCGGGGACATGATTTGGCCCTTTTTTTTTTATTGCTTTGAAACTGGCTAGGAAAAGGAACCTTCTCTGAAAATTTTGCCCATGTATGATGTATCCATTACACCACTCCAATTTAGAGTTTGTTGCCGTAATGGTATCTTTTGTGTTAGCATTGTTATCTTTTTACTTGTTCTGGTGCAAGTATAATTCTTTCAATGAGAATGATAGACGCAGATGCACATACTGAAGAATATTGTTAGCACTCTTCTTTTACCTAAAATTTTAAAATTGACAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00153	56118	64767	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006413 translational initiation

molecular_function
GO:0003743 translation initiation factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000153s00013683.1	PF01873.12	eIF-5_eIF-2B	129	247	3.30E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.773
SRR1783600	control	11.408
SRR1783602	moderate drought stress	8.763
SRR1811619	moderate drought stress	8.759

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.078
DRR006520	Root Summer glycyrrhizin high producing strain	19.584
DRR006521	Root Winter glycyrrhizin high producing strain	20.316
DRR006522	Root Winter glycyrrhizin high producing strain	19.544
DRR006523	Root Summer glycyrrhizin low producing strain	21.440
DRR006524	Root Summer glycyrrhizin low producing strain	21.928
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.285
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.315

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.389
SRR2868004	Drought Stress (root)	14.139
SRR2967015	Control (root)	15.580

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.247
SRR9715740	Leaf	9.483
SRR9715741	Leaf	10.916
SRR9715739	Root	4.086
SRR9715742	Root	12.446
SRR9715743	Root	12.386

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.207
SRR8749028	MeJA induced 9h	18.950
SRR8749029	MeJA induced 9h	27.311
SRR8749030	Uninduced	13.995
SRR8749031	Uninduced	7.270
SRR8749032	Uninduced	9.397

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.681
SRR8400027	Control - Root	42.682