Gene detail information of Glyur000152s00012730 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G15910.1 | 1.00E-12 | drought-induced 21 |
| NR | XP_003546362.1 | 7.07E-33 | PREDICTED: late embryogenesis abundant protein Lea5 [Glycine max] |
| Swissprot | tr|Q39644|LEA5_CITSI | 1.00E-18 | Late embryogenesis abundant protein Lea5 |
| trEMBL | tr|V7B031|V7B031_PHAVU | 1.00E-25 | Uncharacterized protein {ECO:0000313|EMBL:ESW10920.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00152 | 266689 | 267555 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000152s00012730.1 | PF03242.8 | LEA_3 | 1 | 103 | 2.10E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.957 |
| SRR1783600 | control | 8.997 |
| SRR1783602 | moderate drought stress | 9.692 |
| SRR1811619 | moderate drought stress | 10.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.920 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.838 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.642 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.838 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.059 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.955 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.074 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.871 |
| SRR2868004 | Drought Stress (root) | 7.633 |
| SRR2967015 | Control (root) | 8.370 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.493 |
| SRR9715740 | Leaf | 7.503 |
| SRR9715741 | Leaf | 6.873 |
| SRR9715739 | Root | 4.455 |
| SRR9715742 | Root | 7.376 |
| SRR9715743 | Root | 9.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.739 |
| SRR8749028 | MeJA induced 9h | 7.283 |
| SRR8749029 | MeJA induced 9h | 13.471 |
| SRR8749030 | Uninduced | 0.733 |
| SRR8749031 | Uninduced | 0.579 |
| SRR8749032 | Uninduced | 1.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.828 |
| SRR8400027 | Control - Root | 15.104 |