Gene detail

Gene detail information of Glyur000152s00012726

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G50990.1	2.00E-133	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	KEH37236.1	0	pentatricopeptide (PPR) repeat protein [Medicago truncatula]
COG	YP_001196138.1	2.00E-13	3-oxoacyl-ACP synthase [Flavobacterium johnsoniae UW101]
Swissprot	tr\|Q9FI49\|PP428_ARATH	7.00E-165	Pentatricopeptide repeat-containing protein At5g50990
trEMBL	tr\|A0A072V6I7\|A0A072V6I7_MEDTR	0	Pentatricopeptide (PPR) repeat protein {ECO:0000313\|EMBL:KEH37236.1}

Sequence

Transcript Sequence

>Glyur000152s00012726.1
ATGGATCTGTTCAACATGAATTTAGTGGTTGAAAGCTTAATGAAAGCTGGGGAATGTGATGTTGCCAAGAAGCTGTTTGGCAAAATGCCTGTTCGAGATGTGGTCACTTGGAACACCATGATTGGAGGGCATGTTAAAAACTCGCGCTTCCTCGATGCGTTGAGCTTATTCCGCGGCATGATGAGTGCCAAGGTTGAGCCTGATGGGTTTACCTTTGCTTCTGTGGTTACCGGGTGTGCACGCCTTGGGGCTCTTTGCAATGCCAAGTGGGTGCATGGTTTGATGGTTGAGAAAAGGGTTGAACTGAATTATATACTGAGTGCTGCATTGGTTGACATGTATGCTAAGTGTGGTAGGATCGATGTTTCGAAGCAAGNTTTTGATGGTGTGGCGCGCGATCACGTGTCTGTTTGGAATGCTATGATTAATGGGTTGGCGATTCACGGGCTTGCTTCGGATGCCGCTGTGGTTTTTTCGAGGATGGAGATGGAAAATGTTTTGCCGGATTCTGTTACTTTTGTTGGGATTCTGAAAGCGTGTAGCCACTGTGGATTGGTTCAGGAAGGCCGCAAGTACTTTGATATGATGCAGAATCGGTTCTTGATTCGGCCGCAACTCGAGCATTACGGAACCATGGTTGATCTCTTGGGACGAGCAGGGCTCTTGGAAGAGGCCTATGTCATGATTAAGGCGATGACGGTGGAGCCTGATGTTGTTATCTGGAGAGCACTTCTGAGTGCTTGTAGAATCCACAGAAAGAAAGAACTTGGCGAATTCGCNATCGCAAATATTTCCCGTCTTGAGAGTGGTGATTTTGTCTTGCTGTCGAATATGTATTGCTCTTTAAAGAGCTGGCACAGTGCCGAGAGGGTGAGGCAAGTGATGAAAATGGGAGGAGTTCGTAAAAAGCGTGGTAAGAGTTGGATTGAATTGGGGGACANCATTCACCAATTCAATGCAGCTGATCAGTCACGTGCTGAAATGAAAACAATTTACAGGGTGCTGGAAGGTTTGACCCAGAGAGCTAAGCTGGAGGGCTTCAAACCCTTGACTGATCTGGTTTTGATGGATGTTTCAGAAGAGGAAAAGGAGGAAAATTTAATGTTTCATAGTGAGAAGCTGGCCTTGGCCTATGGGGTTCTGAAAAGTAGCCCTGGAACAAAAATCAGGATATCCAAAAACCTGCAGGCTGTTGAATTCCAATCCAAGATCACAGCAAAATCTGGATTCAGTGATGAAACATCCATCCCTCCATCTCTTGCTCAGATACCCAAGATCAAAGCTCTCACCTTTGCCCTTGAAGAGGTTGAGACAATAATGTATTCAGCAATCACAGACCTGTTTCAGAAGAACAACATCAACCCAAAAGCCATTGACATAGTCATCACTAACAGCAGCATCTTCTGTCCCACCCCATCACTTAGTGCCATGGTGGTTAACAAGTTCAGGATGAGGAGCAACATCATGAGCTTCCACCTATCAGGTATGGGGTGCAGTGCTGGGATCATAGCAGTTGGTCTTGCCAGGGACTTGTTGAGAGTTCATAGGAACTCATTGGCCTTAATAGTGAGCACAGAGACTCTGAGTCTAAATTGGTACACAGGTAAAGTCCCATCCATGTTGCTAACTAATTGCCTATTCAGAATGGGTGGATCAGCTATACTGATGTCTAGTAGGGTCCAAGACGAGCACAAGGCGAAGTATGAGCTGCATCATGTTGTTAGAACAATCAATGCACATGATGATCAATCCTATGGATGTGTGTACCAGGATGTGGATTCAGAGGAAAAAGAAGGGGTATCAATATCAAAGAGCATAGTCAATGTGGCTGGTGATGTGCTGAAGAGAAATATAGTTTCACTGGGGCCATTGGTTTTGCCATTGAGGGAGCAATTCCTATATGTGTTTTCCATCATTTGTTACAAGCTATGGAATAGAAGAAGAGGAGGAACAAGCATCTACACCCCNAAATTCAACCGCGCTTTTGAGCATTTCTGCATACATTCAGGGGGAAGAGCAGTTATACAAGCCATTGAAAGAAACCTGAGGCTGAGGAAACAGGATGTGGAACCATCAACCATGACACTTTACAGGTTTGGGAACACTTCATCTGCTTCAATTTGGTACGAGCTTTGCTACATAGAAGCAAAAGGGAGGATGAAGTGTGGGGATAGGGTGTGGCAAATTGCCTTTGGGAGTGGATTCAAGTGTAACAGTGCAGTGTGGAGATGTCTNTGCGATGTGGAGCCTAACACTGACACTGCATGGAGGGATACAATTCACTCATACCCGGTAGATATTTTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00152	259798	263143	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0008152 metabolic process

GO:0008610 lipid biosynthetic process

cellular_component
GO:0016020 membrane

molecular_function

GO:0003824 catalytic activity

GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000152s00012726.1	PF01535.15	PPR	7	32	0.53
Glyur000152s00012726.1	PF13041.1	PPR_2	33	81	8.80E-12
Glyur000152s00012726.1	PF13041.1	PPR_2	135	181	1.20E-07
Glyur000152s00012726.1	PF01535.15	PPR	208	232	0.03
Glyur000152s00012726.1	PF08392.7	FAE1_CUT1_RppA	395	642	1.40E-104
Glyur000152s00012726.1	PF08541.5	ACP_syn_III_C	663	743	6.00E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.681
SRR1783600	control	0.633
SRR1783602	moderate drought stress	1.647
SRR1811619	moderate drought stress	1.661

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.252
DRR006520	Root Summer glycyrrhizin high producing strain	1.160
DRR006521	Root Winter glycyrrhizin high producing strain	3.177
DRR006522	Root Winter glycyrrhizin high producing strain	3.512
DRR006523	Root Summer glycyrrhizin low producing strain	0.809
DRR006524	Root Summer glycyrrhizin low producing strain	0.666
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.945
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.054

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.770
SRR2868004	Drought Stress (root)	0.665
SRR2967015	Control (root)	0.738

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.105
SRR9715740	Leaf	0.520
SRR9715741	Leaf	0.279
SRR9715739	Root	0.449
SRR9715742	Root	0.561
SRR9715743	Root	0.518

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.037
SRR8749028	MeJA induced 9h	1.283
SRR8749029	MeJA induced 9h	0.937
SRR8749030	Uninduced	0.477
SRR8749031	Uninduced	0.140
SRR8749032	Uninduced	0.523

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.943
SRR8400027	Control - Root	1.119