Gene detail

Gene detail information of Glyur000152s00012722

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G15890.1	binding
NR	XP_003547378.2	PREDICTED: condensin-2 complex subunit D3-like [Glycine max]
trEMBL	tr\|A0A072VGF1\|A0A072VGF1_MEDTR	Condensin-2 complex subunit D3 {ECO:0000313\|EMBL:KEH37245.1}

Sequence

Transcript Sequence

>Glyur000152s00012722.1
GGCGGGAAATGAATGCCTGAGAATTTGAAAAAGTAGAGAGAAAAGGTGCAGTGCGGGGAGGAGGAGACGGACATCGAGGGAGAGATGGAGGAGGAAACCATATCCCGCATAGTAGCAGAGGTGGAGGACCTCCGCGACAACACAGAGCCACCCCCTCTCTCTCAACAATCCCTCTCAGACCTCCAACACCTCCTCAACCACAACAACCTAGAATGCCTCTACGACGCCGTTTCCCCCTCCGCCCTCATCCCTCCCATCGCCTCCGCAATGGACTCCTCCCCCACCCCTCACTCCCTCCTCGCCTCTACCCTCTTCCTCTCCCTCCTCCTCTCCCCTAACGCCCCCGTCCTCACCCTCTTCTCCCCTCTCTCCTTCCTCTCCTTCCTCCGCTCCCTCCGCCGCTCCTTCAAAAACCACCCCCACCCACACTCCCATAATAACCACCGCAAAAGGAAACACCNTCCCAAGTCCAGGAAACTTAAACCCTCCCAAAACGACGACGTCGATGACAATCCCTCAGACACCCAACAACAACTCGATGTTAGGGTTTTGCTCCCTCTGCTGGAGAAGCTGGTCCACGTCATGTCCCTGATCCACCTCGACCGTTTCCCCGACAGCCTCAAGTCCCTCGTCCAAACAATCTCCGAGGTTCCCCTGATGGCGCTCGAATCGTGCGGGAACACGAGCAACTACNGCAAATTGGTCAACCTCTGCTCGCGGGTTCTAAAGGAGGTTCTGAGACCGGAGCACGGCGAGCCCCGCGACACCNCCGCCGAGGTTCTGAAGTCGCTGTCACCGCTCGTCCTCATGCCCAAATCTCCGGCGAGGACATTCGCCATNGGCTTCGTTACGAGCCTGGCTAGGGATTCCGATGAGGAAGTGAAGAAGGCGTTGGTGAATTTTCCGAGGTATTTGGCGATGAAGGCGCCGGATAAGGCCGAGCCTAGAGCCTTAGCCGTGGATTCCATCATGGAGGTTGTTAGAGTCATGACATTGGAGGATCAAATTGGGTTTGTGAAGTACGTGGTGAAGATGGCTTTGGGGAAACCAAGCCTCAGGCTTTTGGCGGTTGATCTTATGTTGAACCTGTTAACGTCGTTGAAGGATCCTTTGGGGTTGGGGGTGATTTCGGAGGGAGAAGAGAATAATGGTGACGAGGTGTCGTGGGGGGTGTGGTGTTTGGAGGCGTTGGTGAAGCGTTGTTACGATGTGAGTGGTGTGATTCGGGCGCGGGCATTGTCGAATTTGGCGCAGGTTGTGGGGTTTCTCTCAGGTGATGGTAAGGCTAGTGTGGTACTGAAGGAGTTTATGGGGTTTGGTGAGGTTGGTGATGGGAATGCTGTTGTGGGTGGAAAAAATGGGATGAATGATATGCTGAGGAGAAGGTGCGTGGATGAGAAGGCGGCTGTGAGGAAGGCTGCTATACTTCTGGTTACTAACTTGACTGCGCTACTTGGAGGGGCGATTGATGAGGTGGTGCTCAAGACAATGGGGATGGCTTGTTCTGATCCACTTGTTAGCATGCGCAAAGCAGCACTTGCTGCTCTTTCTGAGGCTTTCAGGACATTCTCAGCCGAAACAGTAATAACTGAGTGGCTACATTCAGTTCCTCGTCTAATAACTGACAATGAAACTAGCATCCAAGAAGAATGTGAGAACATGTTTCAAGAACTTGTCTTGGACCGGATATCTAGAGCTGCATCTGCTACCTCTTCATATAGTGAATCTATGTCTACTAGTAAAATGAAAGGAAAAGGTTTAGACAAAGAGATGGAGATGCTTTTTCCCCAAGGTATTCTGTATCTTCTGAGAGAGATTTGCAATGGGGAGGTGAGCCCTTGGGTGAAGAAAATTTGCACAAACCTAGGCAAAAAGAAACGGATAAATCACAAAATTGTTACTGCACTTCAGAATATAATAAGGGCGTCTGAGTCTATCTGGCTGAGCCATTGCAAGCCAATAGAAAAGTGGACTGCCCCACCAGGTGCTTGGTTTCTTTTATCAGAGGTGTCAGTATTTCTTCCAAAAGCAGTGGCCTGGGATTTTCTTCATCATCACTGGCAGCTTCTTGACAAACATGAAGTGGAAGGCGAGTTCAAAAGCCCATTTGTACAAAGAAATTCATTTGAAGAGGNAGAAAACATAGAATGCAATTCTGTTGCCTGGGCTAGTGACCGAGTTTTCCTCTTACAAACAATCTCTAATGTTTCTGTGGAGCTCCCTCCTGAACCTGCTGCTGATTTGGCTCATAACTTGCTCAAACGGGTTGAAGAATTCAACATGCATTCAACTGAGGTTGATGCTCATGTAAAAGCACTTAAAACGTTGTGCAAGCGGAAAGCTTCAAATCCCTTGGAGGCAGAAGCATTAGTCCTGAAATGGGTACACCAAGTCCTTTTCAGAGCTTCTCAAATAATAGAAAACTTCGTTTCAGTGAATACAGAGCAAAATAGAGAAAGTGACTTCTTCACTCCACCTAGAAGTGGGAGTAGGAAAGGCAGGACATCAGTAGGAAAGGGCAAGTCATTGTCAAAAGCAATTACAGCGGTTTATACAATTGGGTCTTTAGTTATTGTCAGCCCATCTGCTGATATGAGCACTGTAGTCCCATTATTGCACACTATCATCACTTCCGGGAATTCTGGTCCGAAACTAGATAAACTACCCGGCCCTGCNACCTCTCTACAGCAAGAAGCTCCTTCTTTTTATATTCAAGGGTGGCTGGCCATGGGCAAACTTTGCCTTGCTGATGGGAAGCTTGCAAAGAACTATATTCCTCTGTTTGTACAGGAGCTTGAAAAGGCTGAATCTGCAGCTCTTCGCAATAATATTGTGGTGATGATGGCAGATTTTTGTGTTCGATACACTGCTCTTGTTGATTGTTACATAACAAAGATCACGAGGTGTCTCTTAGATCCCTGTGAACTTGTGAGAAGGCAAACGTTCATATTACTCTCGAGATTGTTGCAGAGGGACTATGTGAAGTGGAGAGGAGTGCTATTTCTTCGTTTCCTTTTGTCACTTGTTGATGAATCAGAAAAGATTAGGCGGTTAGCGGATTTTCTCTTTGGAAATATTTTGAAAGTCAAGGCTCCTCTTTTAGCGTATAATAGTTTTGTTGAGGCGGTTTTTGTTTTGAATGACTGCCATGCCCATAATGGACATCGTGAGTCCCATGGATCACGAATGGAAAGTCAACTTTTTTCCATCAGGGGTGCTGATGAAAACTCAAGGTCTAAAAGAATGCACATTTATGTTTCTTTACTAAGACAAATGGCTCCTGAGCATCTTCTAGCAACCTTTGCCAAGTTATGTGCAGAAATTCTAGCTGCAGCTTCTGATGGTATGCTCAATATAGAAGATGCAACTGGACAGTCTGTTCTACAGGATGCATTTCAAATTCTTGGCTGTAAAGAGATACGCATCCCATCCAGTCGTGCGTCATCATCCGAGTCAGCAGACATAGAAGAAGAAGGGGGAGAAAGTGGATCTGCAGCTAGAGGAAAGGCTATTACTCAGGCAGTCAAGAAGGGCCTTATCCAAAACACTGTCCCCATCTTCATAGAGTTGAAACGCCTATTGGAAACCAAGAATAGTCCCCTCATAGGCTCTCTCATGGAGTGCCTCCGGGTCCTTCTCAAGGACTACAAGAATGAGATTGATGACATTTTGGTTGCTGATAAGCAGCTGCAGAAAGAGCTTATCTATGACATGCAGAAATTCGAAGCGGCAAAAGCTAAAGCAACAGTTGCTGAGGCTGTATCCTCCAGGCCAAATCAATCATCACCTGATGTCTCTAAGAATCTGACCAAGACACAAAGAAAAACACTTGGACAGAGTAAGTACAGTAACAAGTTTCCAAGCGGTTCAAAAGTNGCTTCAGCAATGGCAGATGCTGCAGCTGCAGCAACTGCTCGTTCTGTGCTGAGGGAAATCAACAAGGGGACAGGGACGCCACCACTTAGTTCTTTGAACGTTCCGAAAGTCAAGTCTTGTAATGGTGGGTTCATATCTAGAGATGATAAGCGCATGGATGTCATACAATCTCTGCGGAAAAAACATTCTTTCGATGTTTCTGATGATGAAAACTAGAATCAAAATGTATCTTNAGACAAAATATGGGCCTGTGGGGCTCATATTCTTTGCTCACTGTTCGTT

Protein Sequence

>Glyur000152s00012722.1
MEEETISRIVAEVEDLRDNTEPPPLSQQSLSDLQHLLNHNNLECLYDAVSPSALIPPIASAMDSSPTPHSLLASTLFLSLLLSPNAPVLTLFSPLSFLSFLRSLRRSFKNHPHPHSHNNHRKRKHXPKSRKLKPSQNDDVDDNPSDTQQQLDVRVLLPLLEKLVHVMSLIHLDRFPDSLKSLVQTISEVPLMALESCGNTSNYXKLVNLCSRVLKEVLRPEHGEPRDTXAEVLKSLSPLVLMPKSPARTFAXGFVTSLARDSDEEVKKALVNFPRYLAMKAPDKAEPRALAVDSIMEVVRVMTLEDQIGFVKYVVKMALGKPSLRLLAVDLMLNLLTSLKDPLGLGVISEGEENNGDEVSWGVWCLEALVKRCYDVSGVIRARALSNLAQVVGFLSGDGKASVVLKEFMGFGEVGDGNAVVGGKNGMNDMLRRRCVDEKAAVRKAAILLVTNLTALLGGAIDEVVLKTMGMACSDPLVSMRKAALAALSEAFRTFSAETVITEWLHSVPRLITDNETSIQEECENMFQELVLDRISRAASATSSYSESMSTSKMKGKGLDKEMEMLFPQGILYLLREICNGEVSPWVKKICTNLGKKKRINHKIVTALQNIIRASESIWLSHCKPIEKWTAPPGAWFLLSEVSVFLPKAVAWDFLHHHWQLLDKHEVEGEFKSPFVQRNSFEEXENIECNSVAWASDRVFLLQTISNVSVELPPEPAADLAHNLLKRVEEFNMHSTEVDAHVKALKTLCKRKASNPLEAEALVLKWVHQVLFRASQIIENFVSVNTEQNRESDFFTPPRSGSRKGRTSVGKGKSLSKAITAVYTIGSLVIVSPSADMSTVVPLLHTIITSGNSGPKLDKLPGPATSLQQEAPSFYIQGWLAMGKLCLADGKLAKNYIPLFVQELEKAESAALRNNIVVMMADFCVRYTALVDCYITKITRCLLDPCELVRRQTFILLSRLLQRDYVKWRGVLFLRFLLSLVDESEKIRRLADFLFGNILKVKAPLLAYNSFVEAVFVLNDCHAHNGHRESHGSRMESQLFSIRGADENSRSKRMHIYVSLLRQMAPEHLLATFAKLCAEILAAASDGMLNIEDATGQSVLQDAFQILGCKEIRIPSSRASSSESADIEEEGGESGSAARGKAITQAVKKGLIQNTVPIFIELKRLLETKNSPLIGSLMECLRVLLKDYKNEIDDILVADKQLQKELIYDMQKFEAAKAKATVAEAVSSRPNQSSPDVSKNLTKTQRKTLGQSKYSNKFPSGSKVASAMADAAAAATARSVLREINKGTGTPPLSSLNVPKVKSCNGGFISRDDKRMDVIQSLRKKHSFDVSDDEN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00152	226490	232906	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007076 mitotic chromosome condensation

molecular_function
GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000152s00012722.1	PF12717.2	Cnd1	910	1110	1.30E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.389
SRR1783600	control	3.390
SRR1783602	moderate drought stress	2.107
SRR1811619	moderate drought stress	2.080

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.230
DRR006520	Root Summer glycyrrhizin high producing strain	4.205
DRR006521	Root Winter glycyrrhizin high producing strain	2.219
DRR006522	Root Winter glycyrrhizin high producing strain	2.181
DRR006523	Root Summer glycyrrhizin low producing strain	2.412
DRR006524	Root Summer glycyrrhizin low producing strain	2.390
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.808
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.801

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.797
SRR2868004	Drought Stress (root)	7.123
SRR2967015	Control (root)	7.999

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.496
SRR9715740	Leaf	0.386
SRR9715741	Leaf	1.012
SRR9715739	Root	1.669
SRR9715742	Root	2.267
SRR9715743	Root	2.012

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.970
SRR8749028	MeJA induced 9h	9.403
SRR8749029	MeJA induced 9h	3.667
SRR8749030	Uninduced	3.318
SRR8749031	Uninduced	1.476
SRR8749032	Uninduced	1.650

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.116
SRR8400027	Control - Root	9.653