Gene detail

Gene detail information of Glyur000152s00012719.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G15880.1	4.00E-82	Cysteine proteinases superfamily protein
NR	XP_004487849.1	0	PREDICTED: ubiquitin-like-specific protease ESD4-like [Cicer arietinum]
Swissprot	tr\|Q94F30\|ESD4_ARATH	2.00E-124	Ubiquitin-like-specific protease ESD4
trEMBL	tr\|A0A072V5F5\|A0A072V5F5_MEDTR	4.00E-171	Ubiquitin-like-specific protease ESD4-like protein {ECO:0000313\|EMBL:KEH37254.1}

Sequence

Transcript Sequence

>Glyur000152s00012719.1
ACTCAACAAAATTTCCATGTTAGTGACCGGAAAACACACACAGACAGAAACACACACCACCAGTTTCTGTGCATTTAATTTAAAATCCACACTGGACACAGCTGCTTCTATGTCCTATTGACCTATTGTGTCAAACAAATCAAATTCGCGTGTCGTTTCCATCGTCCTCGATAAATTGAAAGCATAAATAAACCCTAATTCCCCAAATTGAGTTGGTGCTGGACATGCTCGTTGTCGAACCACTGCGTTTCGATCAATGGGTGGGATGACCAGCAACCGTAAGCGCAACGAAGAGTGCATGAACGTCGCCAATCACACATTCACAACAATCTCTCCCCCTTCAGATTCACACAGGAAAAGACCCAAATTATCCTCCGAATCGACCCGACCCCTTTTTGCCTCGAACGGCGTCGTTTCGAGGATTTCCCGTTACCCTGAGGCGAAGCGGCCGTTGCTCCGTGAAGTTCACGCGCCGTGCAGGCCCCGAAAATTCGACCTCTCGAGAGCGAAACCGAGGCAGCACAACTACGACGAAAACGAAAACGACGTCGTCGACATTCACATGGGGAATTCTCTGGCGAGGAATTACGAAAAGGCGAAGGACTCGGCATTGGCGAAATGCAGGTTCGTGTCGTGGAAGGGGAAGGAGAAGGAGGTGATCGACGTCGACGCCGAGAGCAGCGAGTGCGATGTTATGGAGGATGATTCCGGCGTGGAGGAGGTGGCGGTCGTGGCTGCCGACGGCGGCGTTCGGCGGCGGTCAACTTCGTCGCCGGATTCCGCGTTGACCAATACCAACCAAGGTAACTTGAAGGTGGCGGCGGCGAGTGGTGGTGATGTGAAGGCGTGGGGCTCTGTGGAGGCTCGTGAGCGTGACCTTTCGAGTGTTCACGCGTATAAGAAGTTGCTTCAGAGTGTTAGCAGGCGAACGGACGCGATTCATAGGCTGGAATTTGAGATTGAACTCAATGAGAAGCGTAGGGAAACGCTTAATTTGTTGCGTCCTAAGAAGGAACCAGTGGAATTGGTGGAGGAAGTAGTGCCCCATGAGCCTTTTGTCCCTCTAACGGAAGAGGAAGAGGATGAGGTTGCTCGCGCCTTTTCTGCCAACCGGAGGAAGATCTTGGTTACCCATGTGAGTTCTAATATTGAGATCACGGGAGATAGGTTACAGTGCCTTAGGCCGGGTGCATGGTTAAATGATGAGGTGATAAATTTGTATCTTGAGTTGCTGAAAGAGAGGGAGCGAAGAGAACCACAGAGGTTTCTGAAATGCCATTTTTTCAATACCTTTTTCTACAAAAAGTTAACGAGTCCCAAGTATGACTACAAAGCTGTCAAAAGATGGACGAGCCGAAGGAAATTGGGATATGACCTATTTGAATGTGATAAGATATTTGTGCCCATCCATCAAGAAATCCATTGGTGCTTGGGCATCATCAATAAAAAAGATAAGAAATTCCAATATCTTGACTCCTTGAAAGGAAAGGATTACCAAGTGCTAAACTCGCTGGCTAAATATTTCGTCCAAGAAGTAAAAGAGAAGACTGAAAAAGATATTGATGAACACATGCCTTACTTCCGGCTTAGGACCGCTAAGGAGATATTGAGACTGAAAGCTGACTAAGCAGAGGAGTGATCATTCATCAGTATTCCAATACTTTGTCATCAATATAGGATTTTTGGCAGCACTTGTTGATGAAGGATCCTTCACTTTTGGCAATGTCTTAACAATAGCTATTCTGGAGTTGGAGNATTTGTTAGCTTGGATTGAGAACTGATACACATATTGTCCCAGTGTTTGGGTACAGCATGCCGGTAGTGTAGAATGCAGTAGGTTGTATATACTATACAACAGTGAATTGTTAGATGAGGCATTGTTTTAAGGTTCAGTTGAGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00152	202562	210566	+

Gene family

Gene family	subfamily
Ubiquitin Family	ULP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0008234 cysteine-type peptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000152s00012719.1	PF02902.14	Peptidase_C48	313	444	6.80E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.218
SRR1783600	control	16.383
SRR1783602	moderate drought stress	18.277
SRR1811619	moderate drought stress	18.263

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.134
DRR006520	Root Summer glycyrrhizin high producing strain	17.731
DRR006521	Root Winter glycyrrhizin high producing strain	12.693
DRR006522	Root Winter glycyrrhizin high producing strain	12.182
DRR006523	Root Summer glycyrrhizin low producing strain	24.328
DRR006524	Root Summer glycyrrhizin low producing strain	23.887
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.239
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.349

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.760
SRR2868004	Drought Stress (root)	18.006
SRR2967015	Control (root)	20.201

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.725
SRR9715740	Leaf	23.636
SRR9715741	Leaf	26.100
SRR9715739	Root	12.259
SRR9715742	Root	20.775
SRR9715743	Root	23.211

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.199
SRR8749028	MeJA induced 9h	21.093
SRR8749029	MeJA induced 9h	12.541
SRR8749030	Uninduced	14.898
SRR8749031	Uninduced	8.042
SRR8749032	Uninduced	6.378

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.478
SRR8400027	Control - Root	18.779