Gene detail

Gene detail information of Glyur000152s00012714.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49020.1	0	protein arginine methyltransferase 4A
NR	XP_003546357.1	0	PREDICTED: probable histone-arginine methyltransferase 1.3-like [Glycine max]
COG	YP_007057479.1	1.00E-28	50S ribosomal protein L11 methylase [Rivularia sp. PCC 7116]
Swissprot	tr\|A3KPF2\|ANM14_ARATH	0	Probable histone-arginine methyltransferase 1.4
trEMBL	tr\|I1MGL5\|I1MGL5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G15830.1}

Sequence

Transcript Sequence

>Glyur000152s00012714.1
ATTTCATTAAGTACGACACACGCTACACACACATTAGTCTGTCACCTCCNTCCAACACAACACTGCCAAACCATGAAGAAAGCATCGCACGCTCACTAACAAGTAGTAACAACTAATCACTATAAAACCCCCAAACCCGAAAACACACAGTAAATTAAAACTACTACTCTCACTCTCACATTCATTCAAGCCTCTTTGACGGCCATCAAACCACCAAAACCCTAGTTCCATCTCTTTTCTTTTATTTTATCAGCAGAATATAATAATTATTAATAATTAAGTAATTTTTCGGAGNAAGCAACGATGGAGGATTCAGATGGAGAAAAGAGGAGGAGGCAGCGAGAGTTCAGTTTGGCTTGGGTGGGTGAGTTGTCTTCTACTCCTTCTTCTGCTTCATCGGGGATTGCTCGCCTCANTGGTGACACTCTGCAAATTCAGCAGGATTCTCGCCAGATTGCTCTCTCTGTTAATCTTCCAAATGTTCAGCTATACAGGTTAGGTCCTGTTCAGTCGGTTTGCATGGTGGAAGGGTCTGATGCTGGCAAACAGACATCGTATTCCAGAGGAGTTGCTATACAGTTTAGAAATGAGGAAGAGAGTGAGGCCTTCCATTGTATCTTCCAACAATGGAAGAAGGAATTCAATGTTCAAGGAGGAAACCTGCCAAATGGAACTAATGCAATCACTTCTAAAAGCAAATTTGATGAAAAGATAGAGTCATCTTCTTCAAAAATGTATTTTCATTATTATGGACAACTTCTNCATCAGCAAAATATGTTGCAGGACTATGTGAGGACAGGAACCTATTATGCTGCTGTTATTGAGAATCGCACTGATTTCTTTGGTCGNGTAGTAGTTGATGTTGGTGCTGGTAGTGGTATTTTGTCATTATTTGCTGCTCAGGCAGGTGCGAAACATGTTTANGCTGTAGAAGCATCTGAAATGGCAGAATATGCACGGAAACTTATAGCTGGGAACCCACTACTGGGTCAACGAATTACAGTTATTAAAGGCAAAGTTGAGGATNCTGAATTGCCAGAGAAAGCAGATATTCTGATCTCTGAGCCCATGGGCACCTTGTTAGTTAATGAAAGAATGCTGGAGTCTTATGTCATTGCCAGAGATAGGTTTCTTACCCCTAATGGCAAAATGTTTCCCACAGTTGGAAGGATTCACATGGCACCTTTCAGTGATGAATATTTGTTTGTTGAAATGGCTAATAAGTCCCTGTTCTGGCAGCAACAAAACTATTATGGTGTTGATTTGACGCCCTTACACGGGACTGCCTTTCAAGGATACTTTTCTCAGCCTGTGGTGGATGCTTTTGATCCAAGGTTGTTAATTGCTCCTTCTATGTTCCATGTGTTAGACTTTACCAAAATAAAGGAAGAAGAGCTGTATGAAATTGACATTCCTCTAAAATTCATAGCCACAGTGGGTGCCAGAGTACATGGGTTGGCATGTTGGTTTGATGTGCTGTTCAATGGAAGTACCGTGCAAAGGTGGCTTACCACTTCCCCGGGTTCACCGATAACTCATTGGTATCAGTTGCGTTGTGTTCTCTCCCAGCCCATTTATGTCATGGCAGGACAAGAAATTACTGGCAGGTTGCACTTGATTGCCCACAGTGCCCAGAGTTACACAATCTATTTAACATTGTCAGCTAAAATGTGGGGGCCTGGTGCTGAACAAGGAGGGATTCTACAAACATCATCCTGTAAACTTGATCTGAAAGAACCATACTATAGAATGTCTCAACCACAAGCTTATCCATTAACCCAAGATCAGCAACCTCAACCACTTGTACAGACACAGGATGTAAACATCCAATCCCGGGATTTGGATGAAGCCGAGATACTGCAACAGCCTTCGCCGAATTCATGTGCTCAGATTGACTCATTCATGCAGAATGCATAAGTTAATGAATACTAACCTGTGCTTCTGTTTGTAACATGAATCAGCCAGGGGAATGTGTCTGTCTTTATTTGGACATATACCCCTTGCCTGTAAATTCATCAACATTGCATCCACTGTGTTATTTCGAGTGCTTGTGCTGCAGATCTAGTATTTGATTGCATCATATTTTAGCCAGCAATATATTGAATCCTTGTGCCTGGGAAATTTGAGAGTTGCTGGAAAATTATTAGATTTTGAATCTCCTTTGNAAGGACGGTATCAGAGGTACACATCCACATGGAAGAGGGGAAACGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00152	151316	163162	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05931	CARM1, PRMT4	EC:2.1.1.319	Endocrine resistance	map01522

Gene Ontology

biological_process
GO:0006479 protein methylation

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000152s00012714.1	PF05185.11	PRMT5	183	433	1.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.310
SRR1783600	control	27.578
SRR1783602	moderate drought stress	30.505
SRR1811619	moderate drought stress	30.226

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.791
DRR006520	Root Summer glycyrrhizin high producing strain	30.370
DRR006521	Root Winter glycyrrhizin high producing strain	40.857
DRR006522	Root Winter glycyrrhizin high producing strain	40.116
DRR006523	Root Summer glycyrrhizin low producing strain	32.817
DRR006524	Root Summer glycyrrhizin low producing strain	32.947
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.482
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.443

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.540
SRR2868004	Drought Stress (root)	33.741
SRR2967015	Control (root)	35.049

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.926
SRR9715740	Leaf	25.472
SRR9715741	Leaf	33.173
SRR9715739	Root	18.571
SRR9715742	Root	39.278
SRR9715743	Root	33.965

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.300
SRR8749028	MeJA induced 9h	23.073
SRR8749029	MeJA induced 9h	12.832
SRR8749030	Uninduced	6.390
SRR8749031	Uninduced	2.331
SRR8749032	Uninduced	2.620

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.649
SRR8400027	Control - Root	40.278