Gene detail information of Glyur000152s00012712


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G27700.11.00E-32Ribosomal protein S21e
NRXP_006597726.11.68E-44PREDICTED: 40S ribosomal protein S21 [Glycine max]
Swissprottr|Q3E902|RS212_ARATH9.00E-4240S ribosomal protein S21-2
trEMBLtr|C6SWG4|C6SWG4_SOYBN6.00E-4540S ribosomal protein S21 {ECO:0000256|PIRNR:PIRNR002148}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00152146838148541-


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000152s00012712.1PF01249.13Ribosomal_S21e1742.50E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control93.574
SRR1783600control93.531
SRR1783602moderate drought stress56.347
SRR1811619moderate drought stress55.362

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain171.219
DRR006520Root Summer glycyrrhizin high producing strain170.558
DRR006521Root Winter glycyrrhizin high producing strain80.503
DRR006522Root Winter glycyrrhizin high producing strain79.601
DRR006523Root Summer glycyrrhizin low producing strain140.936
DRR006524Root Summer glycyrrhizin low producing strain140.218
DRR006525Leaf Summer glycyrrhizin high producing strain41.344
DRR006526Leaf Summer glycyrrhizin high producing strain40.773

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)457.846
SRR2868004Drought Stress (root)281.235
SRR2967015Control (root)267.637

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf186.833
SRR9715740Leaf179.660
SRR9715741Leaf159.975
SRR9715739Root272.664
SRR9715742Root205.802
SRR9715743Root201.259

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h212.839
SRR8749028MeJA induced 9h101.560
SRR8749029MeJA induced 9h170.259
SRR8749030Uninduced26.811
SRR8749031Uninduced13.941
SRR8749032Uninduced32.424

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root312.181
SRR8400027Control - Root295.254

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved