Gene detail

Gene detail information of Glyur000152s00012710

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G16560.1	8.00E-160	Protein phosphatase 2C family protein
NR	AFK48548.1	0	unknown [Lotus japonicus]
Swissprot	tr\|Q9LUS8\|P2C40_ARATH	0	Probable protein phosphatase 2C 40
trEMBL	tr\|I3T7Q6\|I3T7Q6_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK48548.1}

Sequence

Transcript Sequence

>Glyur000152s00012710.1
ATGTTGAGAATGGATTTCTTAAACCAGGAGATAAGCATGCTTAGCCCTGAAGGTGAACTTAAAATAAGTTTTGGCTATCAATGCAATAGCGATAAAGGCATACCTTGCAAGGTTGCCAATGGCCGCAAAATCCTTCCTGAAATCCGCAGAACAAGCAGTTTCTCTTGCTTGTCCGGTGCTGCCTTAAGCGCAAATGCCACACTAGCCAACACAAACATCTGCAATGGCGTGATAGGAGAAGAAATCCTTCCGAGTTTGGACTCTCCTAATTCATTTCGGAAGGTACCCTCTTNGCCAAGTCTTGCAAAATTGGATATACTATCACCTTCTCTCCATAGTAGTTTGTCAAACCTAAGTTGCAGCCCATCAACTCCTAGTAATATGCTTGAATATGACCCTTGCACATTAAAATCCATGAGTGCTCCTTTTAAAAGTGAAGGTTTTCTTAATGCTACTGAGGTACAAGTAGCAGGAGGAGCTGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCCGAAGAAAATGGATGGCTCTTTTGTGCAATTTATGATGGCTTTAATGGGAGAGATGCAGCAGACTTTCTGGCTGGTACCCTTTATGACTCTGTTGTATCTCATTTCAATATGTTATATTGGGATTTGGAACCAGATTCCACCAAANTTTCTGACAATGAGGGTTTCGATGGATCCTTACAATATAAGTTGGATGATAGTCCTATTCTTCACGGTCACGGGCATCAATCTCCATTCAAATCTAAGGGAAACAACAATTCTGGTCTTGGCTGTTCTGTACCTGCAAAGTCAGAAGCACCACNTAAACCATTTTCAGATGCGGTACTTGATAGCCTCCAGCATGTTCTTAGTCAGGCTGAGAACGATTTCTTGTACATGGTTGAGCAGGAAATGGAGGAACGTCCGGATTTAGTTTCTATTGGTTCTTGTGTTCTGCTTGTGCTTCTTCATGGGAATGATTTGTATACACTTAATCTAGGAGACAGCAGAGCGGTGTTGGCAACACGCGGTTCAGATGACAGAATGAATGGGAACGAGAGATTGAAAGCTATCCAGCTTACAGATAGTCATACTGTTGACAATGAAGCTGAAAGAGCTCAACTTGTTGCCAGTCACCCTGATGATCCTAAGACCATTGTAGCAGGGAAAGTGAAAGGAAAACTGAAGGTTACACGNGCTTTNGGAGTTGGCTACTTGAAAAAGAAAAATCTGAATGATGCATTGATGGGAATCCTTAAAGTTAGTGAACTTAAAAGCCCGCCATATATTTCAACAGATCCATCAGTGAATGTGCATAAAATCTCTAATTCTGATCAATTTGTTATAGTTGGGAGTGATGGTTTATTTGACTTCTTCAGCAATGATGAAGCAATAANGCTTGTGGAGTCTTATATCTTGAGCAATCCTTTTGGTGATCCAGCTAAATTTCTCATTGAAAAACTAGTAGCAAGAGCAGCTGATTCTGCAGGTTTCAGCATGGAAGAGTTGATGAATGTTCCAGCTGGGAGGAGGAGGAAGTACCATGATGATGTCACTGTAATTGTGATCCTCCTTGGGATAAATCAAAGAACTTCCAAGGCATCAACTTGCATCTAGAGAGTGGCCAAAGAAAATTTTGCATCTTAAGCTTTTCAATGGGCACCTTGATCAAGTAGTATTTCCTAGAAAGTTATGATATTCAGTGTGTACATATGGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00152	141522	143562	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000152s00012710.1	PF00481.16	PP2C	286	488	5.00E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.330
SRR1783600	control	2.494
SRR1783602	moderate drought stress	1.558
SRR1811619	moderate drought stress	1.698

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.830
DRR006520	Root Summer glycyrrhizin high producing strain	3.681
DRR006521	Root Winter glycyrrhizin high producing strain	2.179
DRR006522	Root Winter glycyrrhizin high producing strain	2.032
DRR006523	Root Summer glycyrrhizin low producing strain	2.798
DRR006524	Root Summer glycyrrhizin low producing strain	2.829
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.346
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.606

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.119
SRR2868004	Drought Stress (root)	10.609
SRR2967015	Control (root)	7.982

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.992
SRR9715740	Leaf	17.080
SRR9715741	Leaf	16.051
SRR9715739	Root	1.485
SRR9715742	Root	3.201
SRR9715743	Root	3.546

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.311
SRR8749028	MeJA induced 9h	8.622
SRR8749029	MeJA induced 9h	6.360
SRR8749030	Uninduced	4.148
SRR8749031	Uninduced	4.284
SRR8749032	Uninduced	5.632

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.225
SRR8400027	Control - Root	5.874