Gene detail information of Glyur000152s00012706 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G15780.1 | 2.00E-92 | vesicle-associated membrane protein 724 |
| NR | XP_004487861.1 | 1.34E-141 | PREDICTED: vesicle-associated membrane protein 724-like [Cicer arietinum] |
| Swissprot | tr|O23429|VA724_ARATH | 6.00E-121 | Vesicle-associated membrane protein 724 |
| trEMBL | tr|I1MGK7|I1MGK7_SOYBN | 4.00E-142 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G15760.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00152 | 118890 | 121636 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000152s00012706.1 | PF13774.1 | Longin | 31 | 112 | 2.70E-21 |
| Glyur000152s00012706.1 | PF00957.16 | Synaptobrevin | 137 | 201 | 4.50E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.909 |
| SRR1783600 | control | 22.306 |
| SRR1783602 | moderate drought stress | 23.967 |
| SRR1811619 | moderate drought stress | 23.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.027 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.515 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.928 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.214 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.219 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.342 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.100 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.332 |
| SRR2868004 | Drought Stress (root) | 11.076 |
| SRR2967015 | Control (root) | 13.233 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.458 |
| SRR9715740 | Leaf | 10.568 |
| SRR9715741 | Leaf | 16.131 |
| SRR9715739 | Root | 1.844 |
| SRR9715742 | Root | 4.465 |
| SRR9715743 | Root | 5.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.815 |
| SRR8749028 | MeJA induced 9h | 12.800 |
| SRR8749029 | MeJA induced 9h | 7.971 |
| SRR8749030 | Uninduced | 2.666 |
| SRR8749031 | Uninduced | 0.869 |
| SRR8749032 | Uninduced | 2.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.366 |
| SRR8400027 | Control - Root | 13.020 |