Gene detail information of Glyur000152s00012704 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09070.1 | 2.00E-33 | soybean gene regulated by cold-2 |
| NR | XP_004487863.1 | 5.43E-129 | PREDICTED: ribonucleoprotein RB97D-like [Cicer arietinum] |
| trEMBL | tr|A0A072V6M6|A0A072V6M6_MEDTR | 3.00E-121 | C2 domain protein {ECO:0000313|EMBL:KEH37271.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00152 | 104663 | 105547 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000152s00012704.1 | PF00168.25 | C2 | 8 | 98 | 2.90E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 101.121 |
| SRR1783600 | control | 101.008 |
| SRR1783602 | moderate drought stress | 121.094 |
| SRR1811619 | moderate drought stress | 122.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 594.351 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 588.156 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 109.693 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 106.493 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 739.670 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 740.205 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 495.931 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 496.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 131.829 |
| SRR2868004 | Drought Stress (root) | 260.218 |
| SRR2967015 | Control (root) | 597.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3086.870 |
| SRR9715740 | Leaf | 2377.668 |
| SRR9715741 | Leaf | 3592.786 |
| SRR9715739 | Root | 1931.247 |
| SRR9715742 | Root | 2404.946 |
| SRR9715743 | Root | 2100.380 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 455.319 |
| SRR8749028 | MeJA induced 9h | 461.523 |
| SRR8749029 | MeJA induced 9h | 511.040 |
| SRR8749030 | Uninduced | 276.272 |
| SRR8749031 | Uninduced | 400.252 |
| SRR8749032 | Uninduced | 604.872 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 135.123 |
| SRR8400027 | Control - Root | 192.987 |