Gene detail

Gene detail information of Glyur000152s00012701

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48970.1	7.00E-152	Mitochondrial substrate carrier family protein
NR	KEH37273.1	0	substrate carrier family protein [Medicago truncatula]
Swissprot	tr\|O04619\|ADNT1_ARATH	7.00E-50	Mitochondrial adenine nucleotide transporter ADNT1
trEMBL	tr\|A0A072V7F3\|A0A072V7F3_MEDTR	0	Substrate carrier family protein {ECO:0000313\|EMBL:KEH37273.1}

Sequence

Transcript Sequence

>Glyur000152s00012701.1
CTTCTTTCATCTTTTTTTTTTAATATTAATATTAGTTGTCGCCTGTTTCGGACTCTGCTAAATTCCTGCGAAGCCTCAGACGGAGAGAGGAGAAGTCGCCGTTCTCAAACCTCTCAACAATCAAATAAGGCGGCAACAAGAACAAAGTTTTCCTTCCCTCCCTCTCCTCTCTTTCTCTCTCTAAAACTCCAATGTCTGCTCCCTTCTCCATTGCCGCCTTTTCCATCTTCACTTTCTGGTTGTAGTTGGAAAGGGAAGGGTGTTACTAGTGGCAATGGAGGAGGAGGAGCCGAGCCAGTGGAAGCGGGCCATGGTTGATTCCTCCGCTGGGGCTATTTCCGGTGCTATCTCACGGACAGTGACGTCACCCCTTGATGTTATTAAGATTAGGTTCCAGGTTCAACTAGAGCCCACTTCCTCGTGGACCTCACTACGCAAGGATTTGTCTAATCCCTCAAAATATACTGGCATGCTTCAAGCAAGCAAAGATATTTTTAGAGAAGAAGGCCTACGGGGTTTTTGGCGGGGCAATGTGCCAGCTTTGCTCATGGTTATGCCATATACAGCTATACAATTTACTGTTTTACACAAGTTTAAGACTTTTGCTTCTGGTTCTTCCAAGACAGAGAATCATATTAATTTGAGCCCTTATCTTTCCTATATAAGTGGGGCATTAGCTGGGTGCGCAGCTACTNTAGGGTCGTATCCCTTTGATCTTCTCCGAACTATTTTAGCTTCTCAGGGTGAACCNAAGGTTTATCCAAACATGAGGTCTGCATTCGTTGATATTCTCCAGACTCGTGGCTTTCCAGGCTTGTATTCTGGATTGTCACCGACACTAGTTGAGATTATACCTTATGCGGGCCTACAATTCGGCACTTATGATACATTTAAACGTTGGGCCATGGCGTGGAACCATCTTCAATATTCAAACACTGCTGCAGAAGATAGCCTCTCTAGCTTTCAGCTCTTCCTGTGTGGGCTGGCAGCAGGAACATGTGCCAAGCTTGTCTGTCATCCACTTGATGTAGTCAAGAAAAGATTTCAGATTGAAGGTCTACAAAGGCATCCAAGATATGGAGCTCGGGTTGAACATCGTGCATACAGAAACATGTTTGACGCCGTGAAAAGGATATTACAGAAGGAGGGTTGGGCTGGTCTATATAAGGGGATAGTCCCATCAACTGTTAAGGCTGCACCAGCTGGTGCTGTAACTTTTGTTGCATATGAAATGACATCAGATTGGCTGGAGTCTATTTTGACTTGATTTTTTTACACTAAAAGAGAAGAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00152	87101	91006	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000152s00012701.1	PF00153.22	Mito_carr	11	112	2.60E-25
Glyur000152s00012701.1	PF00153.22	Mito_carr	124	209	3.00E-20
Glyur000152s00012701.1	PF00153.22	Mito_carr	226	326	1.90E-24
Glyur000152s00012701.2	PF00153.22	Mito_carr	11	92	1.90E-19
Glyur000152s00012701.2	PF00153.22	Mito_carr	111	161	3.10E-11
Glyur000152s00012701.2	PF00153.22	Mito_carr	178	278	1.40E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.969
SRR1783600	control	2.883
SRR1783602	moderate drought stress	7.145
SRR1811619	moderate drought stress	6.920

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.951
DRR006520	Root Summer glycyrrhizin high producing strain	6.578
DRR006521	Root Winter glycyrrhizin high producing strain	13.677
DRR006522	Root Winter glycyrrhizin high producing strain	13.202
DRR006523	Root Summer glycyrrhizin low producing strain	5.973
DRR006524	Root Summer glycyrrhizin low producing strain	6.622
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.908
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.593

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.060
SRR2868004	Drought Stress (root)	27.302
SRR2967015	Control (root)	35.226

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.701
SRR9715740	Leaf	23.772
SRR9715741	Leaf	25.162
SRR9715739	Root	10.889
SRR9715742	Root	9.565
SRR9715743	Root	9.576

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.083
SRR8749028	MeJA induced 9h	74.792
SRR8749029	MeJA induced 9h	58.928
SRR8749030	Uninduced	69.954
SRR8749031	Uninduced	88.645
SRR8749032	Uninduced	158.852

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.219
SRR8400027	Control - Root	17.797