Gene detail

Gene detail information of Glyur000152s00012690

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G07900.1	9.00E-50	Mitochondrial transcription termination factor family protein
NR	XP_004488244.1	5.24E-147	PREDICTED: uncharacterized protein LOC101493031 isoform X1 [Cicer arietinum]
trEMBL	tr\|A0A072V6P9\|A0A072V6P9_MEDTR	5.00E-140	Transcription termination factor family protein {ECO:0000313\|EMBL:KEH37291.1}

Sequence

Transcript Sequence

>Glyur000152s00012690.1
ATGAGAAATTCTCCGGATCCAAGCCACGAAAACGTCGCAATTTTTTGGGGTATGTTACTCGCAACTCGCAAGCCATGGGCAAACAAAAACCCTCAAAGAGGTGGTGAAGCGACCGGTGGGTTCTCTGTCGGAGTTGAAGGAGAGAATATGAGGAGAAAGATGATGGATTTCGCATGTGAAAAAGCATTTGAAATTGAACTGAACCCTCTTCTCTTCTCTTCTCTTCCCCCACAAAATGCTACGTTGCAAGCCTTTGTCCACCTTAACCCCAAAATCATTTTCCCTCTTTTTCCATTGCCATATTCTCTGAAATTGAAACTCTGCACTACCACTTCAGAATCCGAAACCGAATCTGCATCAGAATCTGAATCTTTTACCGTGTCCTACCTCGTCAACAACGTTGGTTTTCCCCGGGAAACTGCTCTGAAAGCTTCAAAACGACTTCGTTTGAAGACCCCGGAGAAGCCTGATTCGGTTCTCGCCTTCTTCAGAAACCGCGGCTTTTCAGACTCCAACATACGCGACATGGTCATAAAGGGACCGCGGCTGCTTTCGTCGCACCCCCACAAATGGATTTCGCCAAAGTTGGATTTTTTTCTCTCAAAAGGTGCCTCCGCCTCTGACATTGCTCGCATGTTGACGGAGAACCCCAGAATCCTACAAGTAAGCTTAGAGAGGCGTATAGTCCCTCTTTACGAATTGTTAAAGAGGTTCTTCAAATCGGACAGGGAAACAATGGCTTGCATAATTCGCTACACCTTGTTTTATTCCCGGACCGTGTCTAATCTCAAGATGATGATTGATTTTGGGGTTTGTGATTCCTGCATTTCCAGAATGCTTCTCTCGCGGCCATCTTTACTGGGCTCAATTAACATGCTGGAGTCGTTGGAGGAAGTGAAGGGTTTGGGGTTTGACCCTTCAAAATACACTTTTGCAGTGGCTTTGTTAGCAAAGAGAACTGTCAGCAAAAGCCGTTGGGATGAGAAAGTTGACACCTTTAAGAAGTGGGGCTGGTCTGATGAAGCTGTTCTTCAAGCATTTAGATCGCAGCCTAATGTGATGCTGGTGTCCAGCGATAAGATTAATTTGGTGATGAGTTTCTGGGTGAATCATTTGGGTTGGGACTCCTTGGCACTTACCAGAGGACCAACACTTTTTGGGTTAAGTTTGGAGAGAAATATCATTCCAAGGGCCTCAGTTGTGCAATTTCTTCTGAAGAAAGGTTTGCGAAAAGAGAATGCTAGCTTAGTTAAACCATTTGTTATGCCTGAGAAATTGTTCCTCAGCAAGTTTGTCTTCGAGAGCGATTCAGTGTCGCCCTCTTGTTTCATTCCATATCCCCCTCCTCCCCCAAATTCCAAGTGGGTGGATTGTGCCTGTGTTCTAGCAGCAGGCAGGCCTAGGGAGAGGCATAGCATGGGGAAGATACACAGCAGCGTGTCACATCGTTGGAGAACGTGTAGCAGCACGCATGGGCAATTAAGCCGGTCCGAGTTAACCACCGAGTCACCCGGTTCAATCCGGTTTTCGACCGAGTCAATGACGTCATCACCGAGTCAATTTTGGGCCTTTGGCGATGGAACGAAAACGAAGGAGAGGTTGAAGGAGAGAGCAAAGGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00152	49	4704	-

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005739 mitochondrion

molecular_function
GO:0003690 double-stranded DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000152s00012690.1	PF02536.9	mTERF	162	314	4.20E-16
Glyur000152s00012690.1	PF02536.9	mTERF	324	428	9.20E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.051
SRR1783600	control	1.144
SRR1783602	moderate drought stress	1.233
SRR1811619	moderate drought stress	1.214

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.455
DRR006520	Root Summer glycyrrhizin high producing strain	1.526
DRR006521	Root Winter glycyrrhizin high producing strain	0.574
DRR006522	Root Winter glycyrrhizin high producing strain	0.502
DRR006523	Root Summer glycyrrhizin low producing strain	1.378
DRR006524	Root Summer glycyrrhizin low producing strain	1.403
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.904
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.928

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.589
SRR2868004	Drought Stress (root)	2.472
SRR2967015	Control (root)	2.959

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.205
SRR9715740	Leaf	1.935
SRR9715741	Leaf	1.252
SRR9715739	Root	1.889
SRR9715742	Root	1.094
SRR9715743	Root	1.397

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.249
SRR8749028	MeJA induced 9h	1.742
SRR8749029	MeJA induced 9h	0.797
SRR8749030	Uninduced	0.990
SRR8749031	Uninduced	0.613
SRR8749032	Uninduced	0.485

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.112
SRR8400027	Control - Root	1.914