Gene detail

Gene detail information of Glyur000151s00010749

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G48110.1	glycine-tRNA ligases
NR	XP_004515344.1	PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial-like isoform X1 [Cicer arietinum]
COG	YP_004173507.1	glycyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
Swissprot	tr\|Q8L785\|SYGM2_ARATH	Glycine--tRNA ligase 2, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|K7KEC9\|K7KEC9_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G26120.2}

Sequence

Transcript Sequence

>Glyur000151s00010749.1
CCCAAATCCTATTATCCTTCCTGAGCGGAAGAAGCAAACCAGCAAGTGAAGTGAAGTGAGGATGGGTATGATGGCGTTGCCACTGGTCATCTCCTTTTTGAAACCCCACACCGCCACCCGCCTCCGCCCCACACTCTTACGCCGTCGTTTCACCTCCGTCACTGTCTCTGCCACCACCACTCCTCCTCCCTCACCCTCACATTCTCTCTCTCACCACTCTTCCTCTTCCTCTTCCTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTGCTTCTACTCATCCCAACAAGCACAACAACACATCCCTCACTTTCCAGCAAGCCATTCAGCGCCTTCAGGAATATTGGGCTTCCGTTGGATGCTCTATAATGCAATGCAGCAACACAGAGGTTGGAGCTGGGACTATGAATCCTCTCACATATTTAAGAGTCCTTGGTCCAGAACCATGGAATGTTGCGTATGTGGAACCTAGCATCCGCCCTGATGATAGTCGATATGGAGAAAACCCAAATAGGCTCCAACGACACACTCAATTTCAGGTGATATTGAAGCCTGATCCTGGAAATTCGCAGGACCTTTTTATCCATAGCCTGTCAGCTTTAGGTATTGATGTTACTGCACATGATATCCGATTTGTGGAGGACAACTGGGAGAGTCCGGTTCTTGGTGCTTGGGGTTTGGGATGGGAAATCTGGATGGATGGGATGGAGATTACTCAATTCACCTACTTTCAGCAGGGAGTCGATCACTTCAAAAAGATCAAATATTCCGATGNAATTACATATGGAGAGTTGTTCCTGGAGAATGAGTACTTCATTACTCTGACTGCTCGACAATATTTTGTTTTTTATTCTAGAAAGGAAATGAGTGCGTATTACTTGGAGCATGCCAGTGTTGATCATGTTCAAAAACATTTTGATTTCTTTGAGGAGGAAGCTCAACAGTTGCTTTCTTCAGGCCTTGCAATCCCCGCGTATGATCAGCTTCTGAAAACGTCTCATGCTTTTAATATCCTAGACTCCAGAGGCTTTGTTGGAGTAACAGAGCGTGCTCGATATTTTGGCCGCATGCGTAGTTTAGCACGCCAGTGTGCTCAACTTTGGTTGAAGACCAGGGAAATGCTTGGGTTCCCCCTTGGTTTCATCTCTGAACCTGATCATTTTGTATTGCCAAAGGAAGTTTTGGAGGCTGCATGTGAGAAGGTGCATGATCATGCAAGANCATTTGTTCTTGAAATTGGAACTGAAGAGATGCCACCTCAAGATGTTGTTGATGCAAGCAAGCAACTGAAAGATTTAATGTTGCAATTACTGGAACGGCAGAGGTTACAGCATGGTGAAGTGCAAGTTTTTGGCACTCCACGTAGATTTGTGGTTGCTGTTGAAAATCTTTTCACTAAACAAACTGAAAAGGAAGTTGAGGTTCGGGGTCCTCCTGTTTCAAAAGCATTTGATCATGAGGGAAATCCAACAAAGGCCATTGAGGGTTTTTCCCGTAGATACTCTGTTCCGCTGGACTTGGTATACAGAAAGGTTGACGGGAAAACAGAATATGTATANGCTCGTATAAAAGAGTCTTCAAGACATGCATTGGAGGTTTTGTCCGAAGATTTGCCTGCTACTATTGCTAAAATTTCATTTCCAAAGACAATGCGTTGGAATTCACAGCATGTGTTTGTGGTGGACTTTTTGCTTCATAGTGGAAACTTGTCTTGTGGTCTTCGTAATACTACTTCAGCTATTGTCCAGGTTGAAAATGCAGAATCTTATTCAGTTGCAATGAAAAATGCGGGAATAAATGTTGCAGTTGAGGACCGTAAGAAAATAATTCTAGAGCAATCCAATACATTAGCAGAAAGTGTAAACGGACAAATTCTTATTCCAAAAGGTTTGCTTGACGAGGTAGTAAATCTTGTTGAGGCACCTGTTCCAGTGCTTGGAAAGTTTAAAGAGACCTTCTTAGATCTTCCAAAAGATCTTTTGACTATGGTTATGCAAAAGCACCAGAAGTATTTTGCTGTATGTGATGCTAATGGACAATTGCTTCCTTACTTTATTGCTGTTGCAAATGGAGCAATTGATGAGACTACAGTGAGGAAAGGAAATGAAGCTGTGCTTAGGGCTCGCTATGAAGATGCTAAGTTCTTTTATGAGTTGGACACACGGAAAAGGTTTTCAGAATTCAGAAAGCAACTTGAAAATATTCTTTTTCATGAGAAGCTTGGAACCATGCTGGATAAAATGACTCGTGTTGAAAACATGGTAACTAAGCTAAGTTGCATCCTGGACATCAATGAAGATATACAACAAATTATCCAGGAAGCTGCCTCACTTGCTATGTCTGATCTTGCCACATCAGTTGTCACTGAATTTACCTCACTTTCAGGGATAATGGGGCGTCACTATGCCCTTAGAGATGGATACTCAGAGCAGGTTGCAGAGGCCTTGCTTGAGATCACGCTTCCTAGATTTTCTGGGGACATACTTCCCAAAAGTGATGCTGGCATAGTTTTGGCAATTGCTGATAGATTAGATAGCCTGGTAGGTTTATTTACCGCTGGNTGTCAACCTAGTTCCACAAATGATCCATTTGGTCTGAGAAGAATCTCATATGGTCTTGTGCAATTATTGGTGGAAAAGAATAAAAACCTAGATTTTAAAGTGGCTCTGGAACTTGCTGCAGATGTCCAGCCCATTAAAGTAGATCCTCGTGTAATAGATGAAGTACATCAATTTGTTACTCGGAGACTAGAGCAATTTCTGGTTGATAAGGGGGTGAGTCCAGAAGTTGTTCGTTCCATCCTTGCAGAGAGGGCAAATTTTCCCTGTCTAGCAGTAAAATCAGCATATAAAATGGAAGAATTATCGAAAGGCCAGCTTTTCCCTAAAGTAGTTGAAGCGTACTCTCGGCCAACAAGAATTGTCCGTGGGAAGGAAGATNGGCTTCAGATGGAGGTGGATGAGGCTGCCTTTGAGACAAATGAAGAGAGAGTTTTGTGGAACACATTTTTGTCAGTTAAAAAGAGCATCAATCCTGGTCTTGAGATCGATGATTTTGTTGATATTTCATCTCAGCTTATACAGCCACTTGAGGATTTCTTTAACAATGTCTTCGTAATGGTGGATGATGCCAAAATCAGAGAAAACAGGCTAGCTCTNCTAAAAGGAATTGCTGAACTCCCTAAAGGAATTGCAGACCTTACAGTGTTACCAGGATTTTAAGAATTGGAATTTTGCAAGCAGATATATTATTTATTTCCCATAGGATAGACCATCATTTTTTAGGCCTCAAAAGATGTAGAGCAATTTGGCTCAACTTCTTCAACCCCCTTGGTTTAATAAGAGTATGTATCCATGGCTTTTATTTTTGTTTTTCTGGCCTTG

Protein Sequence

>Glyur000151s00010749.1
MGMMALPLVISFLKPHTATRLRPTLLRRRFTSVTVSATTTPPPSPSHSLSHHSSSSSSSSSSSSSSSSASTHPNKHNNTSLTFQQAIQRLQEYWASVGCSIMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIHSLSALGIDVTAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQGVDHFKKIKYSDXITYGELFLENEYFITLTARQYFVFYSRKEMSAYYLEHASVDHVQKHFDFFEEEAQQLLSSGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTREMLGFPLGFISEPDHFVLPKEVLEAACEKVHDHARXFVLEIGTEEMPPQDVVDASKQLKDLMLQLLERQRLQHGEVQVFGTPRRFVVAVENLFTKQTEKEVEVRGPPVSKAFDHEGNPTKAIEGFSRRYSVPLDLVYRKVDGKTEYVXARIKESSRHALEVLSEDLPATIAKISFPKTMRWNSQHVFVVDFLLHSGNLSCGLRNTTSAIVQVENAESYSVAMKNAGINVAVEDRKKIILEQSNTLAESVNGQILIPKGLLDEVVNLVEAPVPVLGKFKETFLDLPKDLLTMVMQKHQKYFAVCDANGQLLPYFIAVANGAIDETTVRKGNEAVLRARYEDAKFFYELDTRKRFSEFRKQLENILFHEKLGTMLDKMTRVENMVTKLSCILDINEDIQQIIQEAASLAMSDLATSVVTEFTSLSGIMGRHYALRDGYSEQVAEALLEITLPRFSGDILPKSDAGIVLAIADRLDSLVGLFTAGCQPSSTNDPFGLRRISYGLVQLLVEKNKNLDFKVALELAADVQPIKVDPRVIDEVHQFVTRRLEQFLVDKGVSPEVVRSILAERANFPCLAVKSAYKMEELSKGQLFPKVVEAYSRPTRIVRGKEDXLQMEVDEAAFETNEERVLWNTFLSVKKSINPGLEIDDFVDISSQLIQPLEDFFNNVFVMVDDAKIRENRLALLKGIAELPKGIADLTVLPGF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00151	202793	220046	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14164	glyQS	EC:6.1.1.14	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process
GO:0006426 glycyl-tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0004820 glycine-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000151s00010749.1	PF02091.10	tRNA-synt_2e	83	357	4.40E-118
Glyur000151s00010749.1	PF02092.12	tRNA_synt_2f	387	915	1.90E-162

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.877
SRR1783600	control	3.961
SRR1783602	moderate drought stress	4.579
SRR1811619	moderate drought stress	4.662

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.716
DRR006520	Root Summer glycyrrhizin high producing strain	4.691
DRR006521	Root Winter glycyrrhizin high producing strain	2.723
DRR006522	Root Winter glycyrrhizin high producing strain	2.642
DRR006523	Root Summer glycyrrhizin low producing strain	5.452
DRR006524	Root Summer glycyrrhizin low producing strain	5.304
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.797
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.951

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.257
SRR2868004	Drought Stress (root)	5.446
SRR2967015	Control (root)	6.427

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.880
SRR9715740	Leaf	9.122
SRR9715741	Leaf	5.703
SRR9715739	Root	1.021
SRR9715742	Root	3.457
SRR9715743	Root	3.709

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.371
SRR8749028	MeJA induced 9h	4.563
SRR8749029	MeJA induced 9h	3.519
SRR8749030	Uninduced	0.882
SRR8749031	Uninduced	0.535
SRR8749032	Uninduced	0.800

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.300
SRR8400027	Control - Root	9.706