Gene detail

Gene detail information of Glyur000151s00010745

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G07320.2	4.00E-78	ribosomal protein L4
NR	KEH17863.1	1.58E-138	50S ribosomal protein L4, bacterial/organelle protein [Medicago truncatula]
COG	YP_007158202.1	4.00E-74	LSU ribosomal protein L4P [Anabaena cylindrica PCC 7122]
Swissprot	tr\|O50061\|RK4_ARATH	1.00E-112	50S ribosomal protein L4, chloroplastic (Precursor)
trEMBL	tr\|A0A072TM19\|A0A072TM19_MEDTR	6.00E-139	50S ribosomal protein L4, bacterial/organelle protein {ECO:0000313\|EMBL:KEH17863.1}

Sequence

Transcript Sequence

>Glyur000151s00010745.1
AATGATTTGAAGGGATAGGATAGAAGCCACAAACTCACTCACTCGCTCTTCCCACTGAAACTGAAACTGAAACTGAAACCCAACATGGCTGCTCTCTCCACACTAACACCAACCTCAACTTCCCTCTCCTTTTTCTCCTCCTCAATCTTCCTCTCTAACCCTTCAACACACCACAAACTCAAATTCCCCATCAAATTGCGCCCAAATTCACATTCACATTCAAATTCAAATTCAAATTCAAATTCAAATTCACGTTCTCTCTCCATCGCCTGCAAACTCGCGACGCTCCCGGTGCTCTCCTTTTCCGGCGAGAAAATCGGCGAGTCCACCCTCGACCTGAAGTCCGCCCCTGCCGACACCGCCCGAGCCGTCGTCCACCGCGCCGTCGTCCACGACCTCCAGAACAAGCGCCGCGGCACCGCCTCCACCCTAACCCGCGGCGAGGTCAGCGGCGGAGGAAGGAAACCCTACCGCCAGAAGAAGACCGGCAACGCCCGCCGTGGATCCACCCGGACGCCGCTGCGTCCAGGTGGAGGCGTCGTGTTCGGCCCTAAGCCCCGCGACTGGAGCATCAAGATCAACCGGAAGGAGAAGAGGCTTGCCATCTCGACCGCGGTGGACAGCGCCNCCGTGAATACCGTTGTGGTGGAGGAGTTCGCGGCGGAGTTCGAGGGGAAGCCGAAGACGAAGGAGTTCATCGCCGCCATGAAGCGGTGGGGACTTGACCCGAAGGAGAAGGCCGTGTTTGTNATGACGGAGGTGCCTGAGAGCGTGTTGCTCTCCAGCAGGAACATTGGAACACTGAAGNTATTGACGCCAAGGACGCTTAATTTGTATGATATTTTGAATGCTGATAAGCTTGTGCTCACCCCTGCTGCTGTGGATTACTTGAATCAGAGGTACGGGGTTAATTACCAAGGCGACGAGGACGATGAAGAAGAAGAAGATGTAGTGGATGGTGAAGAAGGACCTGAGACAGAAGATAGTGTTGATGTGGTGAATTGAAGGTTTAAACTTTAAAGTCTTCTTTGCATGGTCGTTCCATTTTATAGAGGATATTGCTGATACCGGGTATGGAAGGTCTCAAGTCTTGTTTGTACCAATTTGTATGCTTCTTTTTCTTTCCATCACTTAGGTCCTAATCCAGGTAGCCTGTAAGGATATTTATCTTTACCTCACAATCATATAATGTTGCAGCCTACTGAGTAATTTATTGAATCAATTTTGTTNCTTGTAGTCTTTTATTGCAAATGTATGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00151	184550	186650	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component
GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000151s00010745.1	PF00573.17	Ribosomal_L4	91	272	5.50E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.021
SRR1783600	control	22.054
SRR1783602	moderate drought stress	19.602
SRR1811619	moderate drought stress	19.377

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.859
DRR006520	Root Summer glycyrrhizin high producing strain	27.766
DRR006521	Root Winter glycyrrhizin high producing strain	10.369
DRR006522	Root Winter glycyrrhizin high producing strain	10.632
DRR006523	Root Summer glycyrrhizin low producing strain	25.982
DRR006524	Root Summer glycyrrhizin low producing strain	26.938
DRR006525	Leaf Summer glycyrrhizin high producing strain	164.293
DRR006526	Leaf Summer glycyrrhizin high producing strain	165.910

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.845
SRR2868004	Drought Stress (root)	20.473
SRR2967015	Control (root)	18.036

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	168.967
SRR9715740	Leaf	141.618
SRR9715741	Leaf	125.248
SRR9715739	Root	33.766
SRR9715742	Root	32.230
SRR9715743	Root	35.173

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.604
SRR8749028	MeJA induced 9h	8.499
SRR8749029	MeJA induced 9h	6.542
SRR8749030	Uninduced	5.709
SRR8749031	Uninduced	1.427
SRR8749032	Uninduced	1.320

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.903
SRR8400027	Control - Root	29.892