Gene detail information of Glyur000151s00010732 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G61750.1 | 2.00E-52 | RmlC-like cupins superfamily protein |
| NR | AFK41081.1 | 4.54E-123 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9FLT3|GL34_ARATH | 3.00E-64 | Germin-like protein subfamily 3 member 4 (Precursor) |
| trEMBL | tr|I3SLD9|I3SLD9_LOTJA | 2.00E-123 | Uncharacterized protein {ECO:0000313|EMBL:AFK41081.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00151 | 87534 | 88238 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000151s00010732.1 | PF00190.17 | Cupin_1 | 80 | 188 | 9.60E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.227 |
| SRR1783600 | control | 1.314 |
| SRR1783602 | moderate drought stress | 1.219 |
| SRR1811619 | moderate drought stress | 1.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.222 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.506 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.758 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.746 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.304 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.706 |
| SRR2868004 | Drought Stress (root) | 6.527 |
| SRR2967015 | Control (root) | 5.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.428 |
| SRR9715740 | Leaf | 3.050 |
| SRR9715741 | Leaf | 1.878 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 4.852 |
| SRR9715743 | Root | 4.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.086 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.656 |
| SRR8400027 | Control - Root | 2.569 |