Gene detail information of Glyur000151s00010731.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G04600.30Nucleotidylyl transferase superfamily protein
NRXP_004515330.10PREDICTED: tryptophan--tRNA ligase, cytoplasmic-like [Cicer arietinum]
COGYP_255155.12.00E-109tryptophanyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
trEMBLtr|G7ZVT4|G7ZVT4_MEDTR0Tryptophanyl-tRNA synthetase {ECO:0000313|EMBL:AES83323.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold001518026085538-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K01867WARS, trpSEC:6.1.1.2Aminoacyl-tRNA biosynthesismap00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006436  tryptophanyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004830  tryptophan-tRNA ligase activity

GO:0005524  ATP binding

"


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000151s00010731.1PF00579.20tRNA-synt_1b881826.00E-05
Glyur000151s00010731.1PF00579.20tRNA-synt_1b2443756.10E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control27.490
SRR1783600control27.545
SRR1783602moderate drought stress24.365
SRR1811619moderate drought stress23.614

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.886
DRR006520Root Summer glycyrrhizin high producing strain29.566
DRR006521Root Winter glycyrrhizin high producing strain10.544
DRR006522Root Winter glycyrrhizin high producing strain10.328
DRR006523Root Summer glycyrrhizin low producing strain33.478
DRR006524Root Summer glycyrrhizin low producing strain32.655
DRR006525Leaf Summer glycyrrhizin high producing strain14.847
DRR006526Leaf Summer glycyrrhizin high producing strain15.024

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)53.737
SRR2868004Drought Stress (root)36.100
SRR2967015Control (root)35.497

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf18.256
SRR9715740Leaf23.255
SRR9715741Leaf22.436
SRR9715739Root11.255
SRR9715742Root14.885
SRR9715743Root13.389

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h46.702
SRR8749028MeJA induced 9h25.774
SRR8749029MeJA induced 9h31.618
SRR8749030Uninduced11.996
SRR8749031Uninduced4.320
SRR8749032Uninduced7.714

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root33.731
SRR8400027Control - Root31.642

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved