Gene detail information of Glyur000151s00010727 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02150.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004515320.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g02150-like [Cicer arietinum] |
| Swissprot | tr|Q8LPS6|PPR3_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g02150 |
| trEMBL | tr|I1JMN3|I1JMN3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G25670.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00151 | 58168 | 60690 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000151s00010727.1 | PF01535.15 | PPR | 183 | 210 | 0.0032 |
| Glyur000151s00010727.1 | PF01535.15 | PPR | 219 | 247 | 0.17 |
| Glyur000151s00010727.1 | PF01535.15 | PPR | 252 | 279 | 0.00061 |
| Glyur000151s00010727.1 | PF01535.15 | PPR | 288 | 313 | 0.22 |
| Glyur000151s00010727.1 | PF01535.15 | PPR | 396 | 416 | 0.0056 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.976 |
| SRR1783600 | control | 4.048 |
| SRR1783602 | moderate drought stress | 3.541 |
| SRR1811619 | moderate drought stress | 3.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.395 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.376 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.606 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.546 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.824 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.816 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.560 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.900 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.235 |
| SRR2868004 | Drought Stress (root) | 8.946 |
| SRR2967015 | Control (root) | 8.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.420 |
| SRR9715740 | Leaf | 27.690 |
| SRR9715741 | Leaf | 13.615 |
| SRR9715739 | Root | 1.089 |
| SRR9715742 | Root | 3.689 |
| SRR9715743 | Root | 2.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.845 |
| SRR8749028 | MeJA induced 9h | 4.489 |
| SRR8749029 | MeJA induced 9h | 3.704 |
| SRR8749030 | Uninduced | 2.102 |
| SRR8749031 | Uninduced | 1.134 |
| SRR8749032 | Uninduced | 0.900 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.568 |
| SRR8400027 | Control - Root | 8.523 |