Gene detail

Gene detail information of Glyur000151s00010725

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G44740.1	5.00E-70	cyclin p4;1
NR	KHN12243.1	1.29E-130	Cyclin-U4-1 [Glycine soja]
Swissprot	tr\|O80513\|CCU41_ARATH	5.00E-103	Cyclin-U4-1
trEMBL	tr\|I1KJF7\|I1KJF7_SOYBN	3.00E-130	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G13200.1}

Sequence

Transcript Sequence

>Glyur000151s00010725.1
TCAGAATTTCAAAAATTTCTTGCACCAAAACTTGGTTAGTGTGATTCAATGGCAGAGCTGGAGAGTCCAAGTGTGATTCCAAAGCTGATAACTTTCCTCTCCTCACTGCTTGAAAGGGTGGCAGAATCAAATGATCATAGCCAGCAGCAGCTACAGCTACAGCAGAAGGTGTCAGTCTTCCATGGCCTAACACGACCCAACATCTCAATTCAGAGCTACCTTGAGAGGATCTTCAAGTACGCCAANTGCAGCCCTTCATGCTTCATTGTTGCTTATGTCTACCTCGATCGTTTCACCCAAACACAACCTTCCTTGCCCATCAACTCCTTCAACGTGCACCGGTTATTGATCACCAGTGTTATGGTAGCTGCCAAATTCATGGACGATATGTACTACAATAATGCTTACTATGCAAAAGTTGGAGGAATCACAAAAACGGAGATGAATTTTCTTGAGTTGGATTTCCTGTTTGGTTTAGGTTTCCATTTAAATGTAACCCCAGGCACCTTCCAAGCCTATTGTGTCCATCTCCAAAGAGAAATGCTGCAGATGCAACCTCTAGATTTTGCAGATTCCACCCTAAGTTTAGGAAAATCACTAAAGGCCCACTTATGCTTCAATGAGGATGAATCTTCCCATCAAAAGCAGCAACAACAACAGCTAGCTGTTTGATTCGGTGCATTTTTCTCAATGCATGTAGCCTGGTTGACTAGTTGTAAATGTAGTGAATCTATTACAGACTGGCAATTTAAACTACTTTTCCTTGTGGAATCCACTTGATCCTTTTGGACTCTCATTTTGTTTTNCTTTTTCTTTTACTTACTCTTTTTACTTTTTGTCTTTTTCAATTTTTGAAGTCTGGTTAGTGGTTATATCATGCNGTAGTGTACAGACAATTGTCTCTTTAGGGCATCTCAAGTAAANTTTGGTGTAGTTCAATTGAAAACACACGCTAGGTTTATGAAGGGGACTCAGGTTTGAATCCCACCTCATGGGAATACCTCAAGTGTCCACTAGAGAGTCAAAGGTCCTATTTACGGTGGGTTAGCAAGAAAAAAGATTGATATTTTTTATTTTTATTTTGTAAATAAAGAGGTCTAAGACTCTAGGATTAAGTGTGGAAATAGAGAAGGGTACATGGGAGATTTGGATTCGATCAAGCAATCATAGAAGGAACTTCTTCTTGTGACTTGAAGCAAGATTCTTGAGTGTGTAATTTTATTGACTTTTTTCATGGTTGATACTTGACATACACGTTTAGATTCTAGCAACACGTTGCATTGTCAAGGAAACGGACTAATGTGGTTTATTTTGGACAAAATTTATGGTGAAGTAATTAGCTGTGACCACAGCCAGTTTGGCATTTTGCGTATATTGGAGAGAAAGGGATGGATGTACTATGGAGGTACGTATTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00151	52434	54908	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity

molecular_function
GO:0019901 protein kinase binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000151s00010725.1	PF08613.6	Cyclin	11	147	2.80E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.255
SRR1783600	control	22.251
SRR1783602	moderate drought stress	8.117
SRR1811619	moderate drought stress	8.634

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.748
DRR006520	Root Summer glycyrrhizin high producing strain	4.779
DRR006521	Root Winter glycyrrhizin high producing strain	0.079
DRR006522	Root Winter glycyrrhizin high producing strain	0.077
DRR006523	Root Summer glycyrrhizin low producing strain	4.907
DRR006524	Root Summer glycyrrhizin low producing strain	5.143
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.659
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.552

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.579
SRR2868004	Drought Stress (root)	4.978
SRR2967015	Control (root)	4.941

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.705
SRR9715740	Leaf	0.668
SRR9715741	Leaf	1.247
SRR9715739	Root	1.203
SRR9715742	Root	1.075
SRR9715743	Root	1.209

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.151
SRR8749028	MeJA induced 9h	0.559
SRR8749029	MeJA induced 9h	0.443
SRR8749030	Uninduced	1.359
SRR8749031	Uninduced	0.152
SRR8749032	Uninduced	0.301

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.143
SRR8400027	Control - Root	12.537